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Update ACEMID_data_uploader.md
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content/docs/Facilities/Data Capture and Movement/ACEMID_data_uploader.md

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@@ -48,24 +48,23 @@ Before running the script, ensure the following:
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- `Dockerfile` The Dockerfile used to build the docker image of the above bash scripts to run on different platforms.
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5. **Setup Instructions**
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1. **Clone the Repository**
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```
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git clone https://github.com/Australian-Imaging-Service/acemid-uploader.git
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cd acemid-uploader
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```
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2. **Configure Environment Variables**
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Export the following variables in your shell:
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```
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export XNAT_URL="your_xnat_url"
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export USERNAME="your_xnat_username"
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export PASSWORD="your_xnat_password"
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export PROJECT_ID="your_xnat_project_id"
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```
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You can also modify the script directly to hardcode these values if preferred.
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- **Clone the Repository**
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```
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git clone https://github.com/Australian-Imaging-Service/acemid-uploader.git
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cd acemid-uploader
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```
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- **Configure Environment Variables**
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Export the following variables in your shell. You can also modify the script directly to hardcode these values if preferred.
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```
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export XNAT_URL="your_xnat_url"
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export USERNAME="your_xnat_username"
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export PASSWORD="your_xnat_password"
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export PROJECT_ID="your_xnat_project_id"
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```
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3. **Running the script**
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- For ACEMID_uploader.sh script, place this script in the folder of the cleaned export data file folder containing .db files and then run ./ACEMID_uploader.sh
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- For dermoscopy_data_upload.sh script, place this script in the dermoscopy data file folder containing .csv files and then run ./dermoscopy_data_upload.sh input_csv_file_name
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- For remove_phi_report.sh script, place this script in the folder containing the pdf files you want to process and then run ./remove_phi_report.sh
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- For stage_server_monitor.sh, please this script into the specified network drive folder you want to monitor and then run ./stage_server_monitor.sh
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- **Running the script**
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- For ACEMID_uploader.sh script, place this script in the folder of the cleaned export data file folder containing .db files and then run ./ACEMID_uploader.sh
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- For dermoscopy_data_upload.sh script, place this script in the dermoscopy data file folder containing .csv files and then run ./dermoscopy_data_upload.sh input_csv_file_name
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- For remove_phi_report.sh script, place this script in the folder containing the pdf files you want to process and then run ./remove_phi_report.sh
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- For stage_server_monitor.sh, please this script into the specified network drive folder you want to monitor and then run ./stage_server_monitor.sh
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