Kidlang pipeline #118
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| name: Automated Testing for NYUAD Pipelines | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }} (Python ${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.11"] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| # include the subdir requirements file so cache keys update when it changes | |
| cache-dependency-path: | | |
| pipeline/mne_pipelines/requirements.txt | |
| - name: Upgrade pip tooling | |
| shell: bash | |
| run: python -m pip install --upgrade pip setuptools wheel | |
| - name: Install deps (tests + subdir requirements) | |
| shell: bash | |
| env: | |
| PIP_PREFER_BINARY: "1" | |
| run: | | |
| # Install the subdir requirements you added (pandas + mne==1.10.2) | |
| python -m pip install -r pipeline/mne_pipelines/requirements.txt | |
| # PyTest itself | |
| python -m pip install pytest pytest-cov | |
| - name: Verify key packages | |
| shell: bash | |
| run: | | |
| python - <<'PY' | |
| import sys, mne, pandas | |
| print("Python:", sys.version.split()[0]) | |
| print("MNE:", mne.__version__) | |
| print("pandas:", pandas.__version__) | |
| PY | |
| - name: Ensure MEG_DATA exists | |
| shell: bash | |
| run: mkdir -p "$GITHUB_WORKSPACE/pipeline/mne_pipelines/kit_general_pipelines" | |
| - name: Run pytest | |
| shell: bash | |
| env: | |
| PYTHONPATH: ${{ github.workspace }} | |
| MPLBACKEND: Agg # avoid TkAgg on headless CI | |
| MEG_DATA: ${{ github.workspace }}/pipeline/mne_pipelines/kit_general_pipelines | |
| BOX_CLIENT_SDK_CONFIG: ${{ secrets.BOX_CLIENT_SDK_CONFIG }} | |
| BOX_MEG_DATA_PARENT_FOLDER_ID: ${{ secrets.BOX_MEG_DATA_PARENT_FOLDER_ID }} | |
| PYTHONIOENCODING: "utf-8" # ← add this line | |
| run: pytest -v tests/ | |
| - name: Upload pytest results (on failure) | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-logs-${{ matrix.os }}-py${{ matrix.python-version }} | |
| path: | | |
| .pytest_cache/ | |
| **/sanity_check_overview.csv | |
| **/*.log |