Merge pull request #75 from Hzaatiti/eeg-fmri

EEG-FMRI testing script on stimulus computer

Author: Hzaatiti

docs/source/2-operationprotocol/eeg-fmri-protocol.rst

@@ -58,7 +58,14 @@ of static field data for the movement artifacts.
 Data acquisition protocol
 -------------------------
 
-NA
+- Open the BrainVision recorder software in administrative mode
+- File -> Open Workspace, choose a workspace
+
+To choose a simulated environment for EEG signals
+
+- Configuration -> Select Amplifier -> Simulated Amplifier
+- Then Test Signal, This should show you sinusoidal test signals
+
 
 
 

docs/source/3-experimentdesign/exampleexperiments.rst

@@ -1,35 +1,31 @@
 Example Experiments MEG
 -----------------------
 
-.. toctree::
-   :maxdepth: 1
-   :caption: MEG Experiments
+.. nbgallery::
 
    experiments/1-exp-resting-state
    experiments/2-exp-trigger-psychtoolbox
    experiments/3-exp-trigger-psychopy
    experiments/4-face-inversion-psychopy
    experiments/5-responsebox
    experiments/6-exp-sound
-   experiments/7-attention-experiment.rst
+   experiments/7-attention-experiment
+   experiments/8-photodiode
+
 
 
 Example Experiment EEG-FMRI
 ---------------------------
 
-.. toctree::
-   :maxdepth: 1
-   :caption: EEG-FMRI Experiments
+.. nbgallery::
 
    experiments-eeg-fmri/1-alpha-blocking
-
+   experiments-eeg-fmri/2-finger-tapping
 
 
 MEG Lab demonstrations
 ----------------------
 
-.. toctree::
-   :maxdepth: 1
-   :caption: Demonstrations
+.. nbgallery::
 
    demonstration/1-meg-class-demo

docs/source/3-experimentdesign/experiments-eeg-fmri/1-alpha-blocking.rst

@@ -4,11 +4,9 @@ Alpha blocking experiment
 
 In this experiment, the participant will close their eye 12 seconds and then open for 12 seconds.
 This is repeated as blocks for n times.
-The usual time response is TR = 750.
-
 
 
 .. dropdown:: Alpha blocking task code
 
-    .. literalinclude:: ../../../../experiments/EEG-FMRI/eyes-close-open/main.m
+    .. literalinclude:: ../../../../experiments/EEG-FMRI/resting-eye-closed-eye-open/main.m
       :language: matlab

docs/source/3-experimentdesign/experiments-eeg-fmri/2-finger-tapping.rst

@@ -0,0 +1,12 @@
+Finger-tapping experiment
+=========================
+
+
+In this experiment, the participant will tap each finger in a random order for 12 seconds continuously.
+This is repeated 5 times. The block duration is 12 seconds.
+
+
+.. dropdown:: Finger Tapping task code
+
+    .. literalinclude:: ../../../../experiments/EEG-FMRI/finger-tapping/main.m
+      :language: matlab

docs/source/3-experimentdesign/experiments/8-photodiode.rst

@@ -0,0 +1,14 @@
+Experiment example 8: Using Photodiode
+----------------------------------------------
+
+In this experiment, a photodiode is used to estimate the lag in time between a trigger signal sent from the Vpixx system to
+the KIT DAQ computers. With experiments that requires milliseconds precision with a lag time below 5 ms, it is ideal to use a photodiode to correct
+for the lag.
+The estimated lag measured with the below experiment is around 14ms on average with a variance of 0.8.
+
+Authors: Gayathri Satheesh <[email protected]>, Hadi Zaatiti <[email protected]>
+
+.. dropdown:: Photodiode experiment
+
+    .. literalinclude:: ../../../../experiments/psychtoolbox/attention/meg_attention_task.m
+      :language: matlab