Merge pull request #82 from Hzaatiti/operational-protocol

update protocol

Author: Hzaatiti

docs/source/2-operationprotocol/figures/meg-operationprotocol/batteries.png

@@ -0,0 +1,13 @@
+Operational Protocol: OPM
+=========================
+
+There are three ways to coregister with OPM:
+
+way 1: laser scan the participants head and stylus points, then place participant in helmet, then laser scan the fiducials on the face again, followed by the 8 points on the OPM
+(Check if the laser scanner would work with the OPM 8 points) (this way assumes that the participant is not moving their head within the OPM helmet)
+
+way 2: laser scan the participant head and stylus points, then place the participant in helmet, then place HPI coils on known stylus points (must standardize those locations).
+In this case, a script must be ran at beginning and end of the experiment to energize the coils with sinusoidal waves of known frequencies (follow up with fieldtrip tutorial section 2)
+
+way 3: laser scan the participant, mark fiducials, then place participant in helmet, laser scan everything, mark fiducials
+Coregister both set of fiducials

docs/source/2-operationprotocol/figures/meg-operationprotocol/daq_measurement.png

@@ -0,0 +1,32 @@
+Training to become an MEG authorized operator
+=============================================
+
+A project owner can be trained by the MEG lab scientists to become an authorized operator.
+Over the course of a day, they will be taught about the operation protocol described above, the emergency procedures to perform, the safety rules to folow and any
+operation that must be done in the lab prior/post data acquisition.
+
+Once the training is performed, the following form should be submitted to the MEG lab scientists.
+
+.. note::
+    `Access to training attendance form <https://docs.google.com/forms/d/e/1FAIpQLScLW1MOvo-9aAwX2_04FcyLGPR9xtDso9hu9SEixUy2VzuAiw/viewform>`_
+
+
+
+
+Authorization documents
+=======================
+
+
+The following documents need to be signed by the participant prior to the study:
+
+- Consent to participate in a research study
+
+Every project owner must have an IRB for his study approved before getting participants to do their experiment
+
+- IRB approval for project owner
+
+
+Participant recruitment
+=======================
+
+- Prior to arrival, participant is assumed to have no implants, no retainer, no pace-maker, no large-sized-tattoos

docs/source/2-operationprotocol/figures/meg-operationprotocol/fast_scan_pack.png

@@ -73,7 +73,7 @@ Pixel mode experiments
 
 All experiments that uses the Vpixx pixel mode should follow these rules:
 
-- Once the experiment script is run, the experiment should land on an `Introduction page` that can only be skipped by the project owner
+- Once the experiment script is run, the experiment should land on an `Introduction page` that requires a button press to be able to continue by the project owner (the participant should not be able to continue through this page)
 - Prior to landing on the `Introduction page` within your script, you should deactivate the Vpixx Pixel Mode, otherwise there could be false trigger events in the data recording
 
 
@@ -82,4 +82,6 @@ All experiments that uses the Vpixx pixel mode should follow these rules:
 
 Experiments coded in "Presentation" do not enable the Vpixx pixel mode by default.
 If your experiment uses Pixel Mode (i.e., you are using the color of the top left pixel of the screen as a condition to send triggers), you must run the `enablepixelmode.m` script.
-Find the script under  `experiments/psychtoolbox/general/enablepixelmode.m <https://github.com/hzaatiti-NYU/meg-pipeline/blob/main/experiments/psychtoolbox/general/enablepixelmode.m>`_
+Find the script under  `experiments/psychtoolbox/general/enablepixelmode.m <https://github.com/hzaatiti-NYU/meg-pipeline/blob/main/experiments/psychtoolbox/general/enablepixelmode.m>`_
+
+