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2364 lines (2364 loc) · 72.5 KB
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{
"@context": {
"schema": "http://schema.org/",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"owl": "http://www.w3.org/2002/07/owl/",
"bioschemastypes": "https://discovery.biothings.io/ns/bioschemastypes/",
"bioschemastypesdrafts": "https://discovery.biothings.io/ns/bioschemastypesdrafts/",
"dct": "http://purl.org/dc/terms/",
"@dateModified": "03/20/2026, 09:31:56"
},
"@graph": [
{
"@id": "bioschemastypesdrafts:BioChemEntity",
"@type": "rdfs:Class",
"rdfs:comment": "Any biological, chemical, or biochemical thing. For example: a protein; a gene; a chemical; a synthetic chemical.\nVersion 0.8-DRAFT",
"rdfs:label": "BioChemEntity",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/BioChemEntity/0.8-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/BioChemEntity/jsonld/type/BioChemEntity_v0.8-DRAFT.jsonld"
]
},
{
"@id": "bioschemastypesdrafts:BioChemStructure",
"@type": "rdfs:Class",
"rdfs:comment": "WwPDB and related data including modelled and hypothetical data. As well as 3D data for chemicals, e.g. stereo chemistry images in an analyzable format (not pure images). Version: 0.1-DRAFT-2019_06_20 (2019-06-20). Note, the parent class for this type has been updated to a pending class in schema.org.",
"rdfs:label": "BioChemStructure",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/BioChemStructure/0.1-DRAFT-2019_06_20",
"https://github.com/BioSchemas/specifications/tree/master/BioChemStructure/jsonld/type/BioChemStructure_v0.1-DRAFT-2019_06_20.json"
]
},
{
"@id": "bioschemastypesdrafts:BioSample",
"@type": "rdfs:Class",
"rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.",
"rdfs:label": "BioSample",
"schema:additionalType": "https://bioschemas.org/types#nav-draft",
"rdfs:subClassOf": [
{
"@id": "bioschemastypesdrafts:Sample"
},
{
"@id": "schema:BioChemEntity"
}
],
"schema:schemaVersion": [
"https://bioschemas.org/types/BioSample/0.2-DRAFT",
"https://github.com/BioSchemas/specifications/tree/master/BioSample/jsonld/type/BioSample_v0.2-DRAFT.json"
],
"additional_type": "https://bioschemas.org/types#nav-draft"
},
{
"@id": "bioschemastypesdrafts:DNA",
"@type": "rdfs:Class",
"rdfs:comment": "DNA\nVersion: 0.2-DRAFT-2019_06_20 (2019-06-20). Note, the parent class for this type has been updated to a pending class in schema.org.",
"rdfs:label": "DNA",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/DNA/0.2-DRAFT-2019_06_20",
"https://github.com/BioSchemas/specifications/tree/master/DNA/jsonld/type/DNA_v0.2-DRAFT-2019_06_20.json"
]
},
{
"@id": "bioschemastypesdrafts:Enzyme",
"@type": "rdfs:Class",
"rdfs:comment": "Version: 0.1-DRAFT-2019_06_20 (2019-06-20). Note, the parent class for this type has been updated to a pending class in schema.org.",
"rdfs:label": "Enzyme",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/Enzyme/0.1-DRAFT-2019_06_20",
"https://github.com/BioSchemas/specifications/tree/master/Enzyme/jsonld/type/Enzyme_v0.1-DRAFT-2019_06_20.json"
]
},
{
"@id": "bioschemastypesdrafts:Gene",
"@type": "rdfs:Class",
"rdfs:comment": "A discrete unit of inheritance which affects one or more biological traits (Source: https://en.wikipedia.org/wiki/Gene). Examples include FOXP2 (Forkhead box protein P2), SCARNA21 (small Cajal body-specific RNA 21), A- (agouti genotype). Note, this version of the type has been added as a pending class in schema.org.",
"schema:schemaVersion": [
"https://bioschemas.org/types/Gene/0.4-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/Gene/jsonld/type/Gene_v0.4-DRAFT.json"
],
"rdfs:label": "Gene",
"rdfs:subClassOf": {
"@id": "bioschemastypesdrafts:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft"
},
{
"@id": "bioschemastypesdrafts:LabProcess",
"@type": "rdfs:Class",
"rdfs:comment": "This is an initial draft of the new LabProcess type.\n\nA LabProcess represents the specific application of a LabProtocol to some input (biological material or data) to produce some output (biological material or data).\n\nThis draft was prepared by Florian Wetzels and Lukas Weil, its specification is still up for discussion.",
"rdfs:label": "LabProcess",
"rdfs:subClassOf": {
"@id": "schema:Action"
},
"schemaVersion": [
"https://schema.org/docs/releases.html#v23.0"
],
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/LabProcess/0.1-DRAFT",
"https://github.com/BioSchemas/specifications/tree/master/LabProcess/jsonld/type/LabProcess_v0.1-DRAFT.jsonld"
]
},
{
"@id": "bioschemastypesdrafts:LabProtocol",
"@type": "rdfs:Class",
"rdfs:comment": "A lab protocol is a prospective description of a sequence of tasks and operations to be performed during experimental research in wet- or dry-labs. Version: v1.0 Changelog: * Add parameter attribute with Range PropertyValue for better conformance with LabProcess. Prepared by: Florian Wetzels and H. Lukas Weil",
"rdfs:label": "LabProtocol",
"rdfs:subClassOf": {
"@id": "schema:HowTo"
},
"schemaVersion": [
"https://schema.org/docs/releases.html#v29.4"
],
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/LabProtocol/1.0-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/LabProtocol/jsonld/type/LabProtocol_v1.0-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:Phenotype",
"@type": "rdfs:Class",
"rdfs:comment": "A phenotype. Version 0.3-DRAFT-2020_06_07",
"rdfs:label": "Phenotype",
"rdfs:subClassOf": {
"@id": "schema:Thing"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/Phenotype/0.3-DRAFT-2020_06_07",
"https://github.com/BioSchemas/specifications/tree/master/Phenotype/jsonld/type/Phenotype_v0.3-DRAFT-2020_06_07.json"
]
},
{
"@id": "bioschemastypesdrafts:Protein",
"@type": "rdfs:Class",
"rdfs:comment": "Protein is here used in its widest possible definition, as classes of amino acid based molecules. Amyloid-beta Protein in human (UniProt P05067), eukaryota (e.g. an OrthoDB group) or even a single molecule that one can point to are all of type schema:Protein. A protein can thus be a subclass of another protein, e.g. schema:Protein as a UniProt record can have multiple isoforms inside it which would also be schema:Protein. They can be imagined, synthetic, hypothetical or naturally occurring. This version has been added to schema.org as a pending type.",
"schema:schemaVersion": [
"https://bioschemas.org/types/Protein/0.4-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/Protein/jsonld/type/Protein_v0.4-DRAFT.json"
],
"rdfs:label": "Protein",
"rdfs:subClassOf": {
"@id": "bioschemastypesdrafts:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft"
},
{
"@id": "bioschemastypesdrafts:RNA",
"@type": "rdfs:Class",
"rdfs:comment": "RNA. Version 0.1-DRAFT-2019_06_21",
"rdfs:label": "RNA",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/RNA/0.1-DRAFT-2019_06_21",
"https://github.com/BioSchemas/specifications/blob/master/RNA/jsonld/type/RNA_v0.1-DRAFT-2019_06_21.json"
]
},
{
"@id": "bioschemastypesdrafts:Sample",
"@type": "rdfs:Class",
"rdfs:comment": "A Sample is a material specimen taken from a larger source, system, or environment, collected for the purpose of analysis, testing, identification, or demonstration. Examples of Sample type include ice core samples, metal coupons, blood samples, plant samples, etc. Version 0.3-DRAFT. <h4>Summary of Changes</h4><ul><li>Added properties selected by the updated Sample/BioSample working group, which are all the properties except for 'additionalProperty'.</li></ul>",
"rdfs:label": "Sample",
"rdfs:subClassOf": {
"@id": "schema:Thing"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/Sample/0.3-DRAFT",
"https://github.com/BioSchemas/specifications/tree/master/Sample/jsonld/type/Sample_v0.3-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:SequenceAnnotation",
"@type": "rdfs:Class",
"rdfs:comment": "Used to provide metadata about Sequence Annotations. The sequence can be an amino acid (protein) or nucleic acid (Gene, DNA, RNA). Version: 0.1-DRAFT-2019_06_21",
"rdfs:label": "SequenceAnnotation",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/SequenceAnnotation/0.1-DRAFT-2019_06_21",
"https://github.com/BioSchemas/specifications/tree/master/SequenceAnnotation/jsonld/type/SequenceAnnotation_v0.1-DRAFT-2019_06_21.json"
]
},
{
"@id": "bioschemastypesdrafts:SequenceMatchingModel",
"@type": "rdfs:Class",
"rdfs:comment": "A model used to determine sequence matches such as domains in proteins. Version: 0.1-DRAFT-2019_06_21 (2019-06-21)",
"rdfs:label": "SequenceMatchingModel",
"rdfs:subClassOf": {
"@id": "schema:CreativeWork"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/SequenceMatchingModel/0.1-DRAFT-2019_06_21",
"https://github.com/BioSchemas/specifications/tree/master/SequenceMatchingModel/jsonld/type/SequenceMatchingModel_v0.1-DRAFT-2019_06_21.json"
]
},
{
"@id": "bioschemastypesdrafts:SequenceRange",
"@type": "rdfs:Class",
"rdfs:comment": "Used to define the range of a subsequence, typically used in conjunction with SequenceAnnotation to define the range of the annotation on the protein or gene sequence. Version: 0.1-DRAFT-2019_06_21.",
"rdfs:label": "SequenceRange",
"rdfs:subClassOf": {
"@id": "schema:BioChemEntity"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/SequenceRange/0.1-DRAFT-2019_06_21",
"https://github.com/BioSchemas/specifications/blob/master/SequenceRange/jsonld/type/SequenceRange_v0.1-DRAFT-2019_06_21.json"
]
},
{
"@id": "bioschemastypesdrafts:Study",
"@type": "rdfs:Class",
"rdfs:comment": " This Study profile presents the markup when describing a Study Version: 0.3-DRAFT",
"rdfs:label": "Study",
"rdfs:subClassOf": {
"@id": "schema:CreativeWork"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/Study/0.3-DRAFT",
"https://github.com/BioSchemas/specifications/blob/master/Study/jsonld/type/Study_v0.3-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:Taxon",
"@type": "rdfs:Class",
"rdfs:comment": "A set of organisms asserted to represent a natural cohesive biological unit. Version: 0.4-DRAFT-2019_06_24",
"rdfs:label": "Taxon",
"rdfs:subClassOf": {
"@id": "schema:Thing"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/Taxon/0.4-DRAFT",
"https://github.com/BioSchemas/specifications/tree/master/Taxon/jsonld/type/Taxon_v0.4-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:TaxonName",
"@type": "rdfs:Class",
"rdfs:comment": "A name of a biological taxon, may it be valid (zoology) / accepted (botany) or not. Version: 0.1-DRAFT",
"rdfs:label": "TaxonName",
"rdfs:subClassOf": {
"@id": "schema:CreativeWork"
},
"additional_type": "https://bioschemas.org/types#nav-draft",
"schema:schemaVersion": [
"https://bioschemas.org/types/TaxonName/0.1-DRAFT-TYPE",
"https://github.com/BioSchemas/specifications/blob/master/TaxonName/jsonld/type/TaxonName_v0.1-DRAFT.json"
]
},
{
"@id": "bioschemastypesdrafts:additionalProperty",
"@type": "rdf:Property",
"rdfs:comment": "A property-value pair representing an additional characteristics of the entitity, e.g. a product feature or another characteristic for which there is no matching property in schema.org. Note: Publishers should be aware that applications designed to use specific schema.org properties (e.g. https://schema.org/width, https://schema.org/color, https://schema.org/gtin13, ...) will typically expect such data to be provided using those properties, rather than using the generic property/value mechanism. ",
"rdfs:label": "additionalProperty",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:Study"
},
{
"@id": "bioschemastypesdrafts:Phenotype"
},
{
"@id": "bioschemastypesdrafts:Sample"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:PropertyValue"
}
]
},
{
"@id": "bioschemastypesdrafts:alternateIdentifier",
"@type": "rdf:Property",
"rdfs:comment": "An additional identifier for the same instance of the resource. ",
"rdfs:label": "alternateIdentifier",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:PropertyValue"
}
]
},
{
"@id": "bioschemastypesdrafts:alternateScientificName",
"rdfs:comment": "A TaxonName representing a scientific name, with authorship and date information if known, of a synonym of the currently valid (zoological) or accepted (botanical) name.",
"@type": "rdf:Property",
"rdfs:label": "alternateScientificName",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Taxon"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypesdrafts:TaxonName"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:alternativeOf",
"@type": "rdf:Property",
"rdfs:comment": "Another gene which is a variation of this one.",
"rdfs:label": "alternativeOf",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Gene"
},
"schema:rangeIncludes": [
{
"@id": "schema:Gene"
}
]
},
{
"@id": "bioschemastypesdrafts:anatomicalLocation",
"@type": "rdf:Property",
"rdfs:comment": "Any part of an organism, typically a component of an anatomical system. Organs, tissues, and cells are all anatomical locations.",
"rdfs:label": "anatomicalLocation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:anatomicalStructure",
"@type": "rdf:Property",
"rdfs:comment": "Indicate the organ or tissues the sample was collected from.",
"rdfs:label": "anatomicalStructure",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioSample"
},
"schema:rangeIncludes": [
{
"@id": "schema:AnatomicalStructure"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:anatomicalSystem",
"@type": "rdf:Property",
"rdfs:comment": "Indicate the anatomical system from which the sample was collected, e.g. circulatory, digestive, endocrine, immune and other systems.",
"rdfs:label": "anatomicalSystem",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioSample"
},
"schema:rangeIncludes": [
{
"@id": "schema:AnatomicalSystem"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:associatedDisease",
"@type": "rdf:Property",
"rdfs:comment": "Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue.",
"rdfs:label": "associatedDisease",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:MedicalCondition"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:associatedPhenotype",
"@type": "rdf:Property",
"rdfs:comment": "The relevant defining characteristic(s) expressed by the biological source of a typical sample, usually physical.",
"rdfs:label": "associatedPhenotype",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioSample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:QuantitativeValue"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "bioschemastypesdrafts:Phenotype"
}
]
},
{
"@id": "bioschemastypesdrafts:bioChemAssociation",
"@type": "rdf:Property",
"rdfs:comment": "BioChemEntity, e.g., gene, associated to this Phenotype and relevant for its characterization, particularly useful for the molecular basis of this Phenotype.",
"rdfs:label": "bioChemAssociation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Phenotype"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
}
]
},
{
"@id": "bioschemastypesdrafts:biologicalType",
"@type": "rdf:Property",
"rdfs:comment": "Biological type targeted by this model, for instance domains or sites in proteins.",
"rdfs:label": "biologicalType",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceMatchingModel"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:bioSample",
"@type": "rdf:Property",
"rdfs:comment": "BioSample used in the protocol. It could be a record in a Dataset describing the sample or a physical object corresponding to the sample or a URL pointing to the type of sample used.",
"rdfs:label": "bioSample",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
},
{
"@id": "bioschemastypes:BioSample"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Taxon"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:boundMolecule",
"@type": "rdf:Property",
"rdfs:comment": "Molecule, e.g., ligand, bound to this BioChem structure",
"rdfs:label": "boundMolecule",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioChemStructure"
},
"schema:rangeIncludes": [
{
"@id": "schema:BioChemEntity"
},
{
"@id": "schema:ChemicalSubstance"
},
{
"@id": "schema:MolecularEntity"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:cellType",
"@type": "rdf:Property",
"rdfs:comment": "The cell line, lineage or biological/taxonomic classification of a cell.",
"rdfs:label": "cellType",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioSample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:childTaxon",
"rdfs:comment": "Closest child taxa of the taxon in question.\nInverse property: parentTaxon Direct, most proximate lower-rank child taxa",
"@type": "rdf:Property",
"rdfs:label": "childTaxon",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Taxon"
},
"schema:rangeIncludes": [
{
"@id": "schema:Taxon"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:citation",
"@type": "rdf:Property",
"rdfs:comment": "List publications where the sample is mentioned or described.",
"rdfs:label": "citation",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:CreativeWork"
},
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:collectionMethod",
"@type": "rdf:Property",
"rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ",
"rdfs:label": "collectionMethod",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:collector",
"@type": "rdf:Property",
"rdfs:comment": "The Person or Organization who collected the Sample.",
"rdfs:label": "collector",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Person"
},
{
"@id": "schema:Organization"
}
]
},
{
"@id": "bioschemastypesdrafts:computationalTool",
"@type": "rdf:Property",
"rdfs:comment": "Computational tool or workflow used to complete a part of this protocol.",
"rdfs:label": "computationalTool",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "bioschemastypes:ComputationalWorkflow"
},
{
"@id": "schema:DefinedTerm"
},
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:SoftwareApplication"
},
{
"@id": "schema:SoftwareSourceCode"
}
]
},
{
"@id": "bioschemastypesdrafts:conditionsOfAccess",
"@type": "rdf:Property",
"rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.",
"rdfs:label": "conditionsOfAccess",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "dct:conformsTo",
"@type": "rdf:Property",
"rdfs:comment": "Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used. Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example.",
"rdfs:label": "conformsTo",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:RNA"
},
{
"@id": "bioschemastypesdrafts:SequenceRange"
},
{
"@id": "bioschemastypesdrafts:TaxonName"
},
{
"@id": "bioschemastypesdrafts:BioChemEntity"
},
{
"@id": "bioschemastypesdrafts:Study"
},
{
"@id": "bioschemastypesdrafts:LabProtocol"
},
{
"@id": "bioschemastypesdrafts:Phenotype"
},
{
"@id": "bioschemastypesdrafts:SequenceAnnotation"
},
{
"@id": "bioschemastypesdrafts:Taxon"
},
{
"@id": "bioschemastypesdrafts:BioChemStructure"
},
{
"@id": "bioschemastypesdrafts:DNA"
},
{
"@id": "bioschemastypesdrafts:Enzyme"
},
{
"@id": "bioschemastypesdrafts:Sample"
},
{
"@id": "bioschemastypesdrafts:SequenceMatchingModel"
},
{
"@id": "bioschemastypesdrafts:Protein"
},
{
"@id": "bioschemastypesdrafts:Gene"
},
{
"@id": "bioschemastypesdrafts:LabProcess"
},
{
"@id": "bioschemastypesdrafts:BioSample"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:CreativeWork"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:Thing"
}
]
},
{
"@id": "bioschemastypesdrafts:contactPoint",
"@type": "rdf:Property",
"rdfs:comment": "A person or organization that can be contacted for more information or support.",
"rdfs:label": "contactPoint",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Person"
},
{
"@id": "schema:Organization"
}
]
},
{
"@id": "bioschemastypesdrafts:contributor",
"@type": "rdf:Property",
"rdfs:comment": "A person or organization that contributes to the work.",
"rdfs:label": "contributor",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Person"
},
{
"@id": "schema:Organization"
}
]
},
{
"@id": "bioschemastypesdrafts:creationMethod",
"@type": "rdf:Property",
"rdfs:comment": "Method used to create or obtain this annotation or BioChemEntity; please use PropertyValue if you want to include any evidence.",
"rdfs:label": "creationMethod",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:SequenceAnnotation"
},
{
"@id": "bioschemastypesdrafts:BioChemStructure"
}
],
"schema:rangeIncludes": [
{
"@id": "schema:PropertyValue"
},
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
}
]
},
{
"@id": "bioschemastypesdrafts:dateCollected",
"@type": "rdf:Property",
"rdfs:comment": "The date on which the sample was collected.",
"rdfs:label": "dateCollected",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:dateCreated",
"@type": "rdf:Property",
"rdfs:comment": "The date the sample was created or added to a DataFeed.",
"rdfs:label": "dateCreated",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:dateModified",
"@type": "rdf:Property",
"rdfs:comment": "The date sample record was last updated.",
"rdfs:label": "dateModified",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:dateProcessed",
"@type": "rdf:Property",
"rdfs:comment": "The date the sample was processed or used in a method.",
"rdfs:label": "dateProcessed",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:datePublished",
"@type": "rdf:Property",
"rdfs:comment": "The date when the record of the sample will be made publicly available.",
"rdfs:label": "datePublished",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:developmentalStage",
"@type": "rdf:Property",
"rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.",
"rdfs:label": "developmentalStage",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:BioSample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:QuantitativeValue"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:encodesBioChemEntity",
"@type": "rdf:Property",
"rdfs:comment": "Another BioChemEntity encoded by this one. Inverse property: isEncodedByBioChemEntity.",
"rdfs:label": "encodesBioChemEntity",
"schema:domainIncludes": [
{
"@id": "bioschemastypesdrafts:RNA"
},
{
"@id": "bioschemastypesdrafts:DNA"
},
{
"@id": "bioschemastypesdrafts:Gene"
}
],
"schema:rangeIncludes": [
{
"@id": "bioschemastypes:BioChemEntity"
}
]
},
{
"@id": "bioschemastypesdrafts:endDate",
"rdfs:comment": "The end date and time of the item (in ISO 8601 date format). ",
"@type": "rdf:Property",
"rdfs:label": "endDate",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Study"
},
"schema:rangeIncludes": [
{
"@id": "schema:Date"
},
{
"@id": "schema:DateTime"
}
]
},
{
"@id": "bioschemastypesdrafts:endUncertainty",
"@type": "rdf:Property",
"rdfs:comment": "If the initial position is not known with reasonable certainty, specify here the uncertainty type as one of \u2018<\u2019 (any position before than rangeEnd), \u2018>\u2019 (any position after rangeEnd), \u2018~\u2019 (around rangeEnd), \u2018[#-#] (to indicate a range where rangeEnd could be located)\u2019.",
"rdfs:label": "endUncertainty",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:SequenceRange"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}
]
},
{
"@id": "bioschemastypesdrafts:environmentalSystem",
"@type": "rdf:Property",
"rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected. Where possible use controlled vocabulary such as ENVO.",
"rdfs:label": "environmentalSystem",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:Sample"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
},
{
"@id": "schema:URL"
},
{
"@id": "schema:DefinedTerm"
}
]
},
{
"@id": "bioschemastypesdrafts:ethicalLegalSocial",
"@type": "rdf:Property",
"rdfs:comment": "Considerations wrt ethical, legal and social aspects.",
"rdfs:label": "ethicalLegalSocial",
"schema:domainIncludes": {
"@id": "bioschemastypesdrafts:LabProtocol"
},
"schema:rangeIncludes": [
{
"@id": "schema:Text"
}