Add JOSE Paper (#33)

* Add jose workflow file.

* Add first draft of jose paper

* Address minor comments from @jdenholm.

* Update paper with general comments from @jdenholm - loss fn and encoding.

* Remove summary.

* Add SF link.

* Update quote marks.

* Tidy statement of need.

* Update acknowledgments from S. Futures to Sciences.

Author: jatkinson1000

.github/workflows/draft-pdf.yml

@@ -0,0 +1,19 @@
+on: [push]
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Build draft PDF
+        uses: openjournals/openjournals-draft-action@master
+        with:
+          journal: jose
+          paper-path: JOSE_paper/paper.md
+      - name: Upload
+        uses: actions/upload-artifact@v1
+        with:
+          name: paper
+          path: JOSE_paper/paper.pdf

JOSE_paper/paper.bib

@@ -0,0 +1,80 @@
+@article{paszke2019pytorch,
+  title={Pytorch: An imperative style, high-performance deep learning library},
+  author={Paszke, Adam and Gross, Sam and Massa, Francisco and Lerer, Adam and Bradbury, James and Chanan, Gregory and Killeen, Trevor and Lin, Zeming and Gimelshein, Natalia and Antiga, Luca and others},
+  journal={Advances in neural information processing systems},
+  volume={32},
+  year={2019}
+}
+
+@book{barba2019teaching,
+  title={Teaching and learning with Jupyter},
+  author={Barba, Lorena A and Barker, Lecia J and Blank, Douglas S and Brown, Jed and Downey, Allen B and George, Timothy and Heagy, Lindsey J and Mandli, Kyle T and Moore, Jason K and Lippert, David and others},
+  year={2019},
+  url={https://jupyter4edu.github.io/jupyter-edu-book/}
+}
+
+@article{carleo2019machine,
+  title={Machine learning and the physical sciences},
+  author={Carleo, Giuseppe and Cirac, Ignacio and Cranmer, Kyle and Daudet, Laurent and Schuld, Maria and Tishby, Naftali and Vogt-Maranto, Leslie and Zdeborov{\'a}, Lenka},
+  journal={Reviews of Modern Physics},
+  volume={91},
+  number={4},
+  year={2019},
+  publisher={APS},
+  doi={10.1103/RevModPhys.91.045002}
+}
+
+@software{palmerpenguins,
+  title = {{palmerpenguins: Palmer Archipelago (Antarctica) penguin data}},
+  author = {Allison Marie Horst and Alison Presmanes Hill and Kristen B Gorman},
+  year = {2020},
+  note = {R package version 0.1.0},
+  doi = {10.5281/zenodo.3960218},
+  url = {https://allisonhorst.github.io/palmerpenguins/},
+}
+
+@article{kashinath2021physics,
+  title={Physics-informed machine learning: case studies for weather and climate modelling},
+  author={Kashinath, Karthik and Mustafa, M and Albert, Adrian and Wu, JL and Jiang, C and Esmaeilzadeh, Soheil and Azizzadenesheli, Kamyar and Wang, R and Chattopadhyay, A and Singh, A and others},
+  journal={Philosophical Transactions of the Royal Society A},
+  volume={379},
+  pages={20200093},
+  year={2021},
+  publisher={The Royal Society Publishing},
+  doi={10.1098/rsta.2020.0093}
+}
+
+@article{gefen2021ai,
+  title={AI for digital humanities and computational social sciences},
+  author={Gefen, Alexandre and Saint-Raymond, L{\'e}a and Venturini, Tommaso},
+  journal={Reflections on Artificial Intelligence for Humanity},
+  pages={191--202},
+  year={2021},
+  publisher={Springer},
+  doi={10.1007/978-3-030-69128-8_12}
+}
+
+@article{lecun1998mnist,
+  title={The MNIST database of handwritten digits},
+  author={LeCun, Yann},
+  url={http://yann.lecun.com/exdb/mnist/},
+  year={1998}
+}
+
+@software{Allaire_Quarto_2022,
+author = {Allaire, J.J. and Teague, Charles and Scheidegger, Carlos and Xie, Yihui and Dervieux, Christophe},
+doi = {10.5281/zenodo.5960048},
+month = jan,
+title = {{Quarto}},
+url = {https://github.com/quarto-dev/quarto-cli},
+version = {1.2},
+year = {2022}
+}
+
+@software{torchtools,
+  title = {{TorchTools}},
+  author = {James Denholm},
+  year = {2023},
+  note = {Python package version 0.1.0},
+  url = {https://github.com/jdenholm/TorchTools},
+}