Merge pull request #3933 from CliMA/tr/bump

Bump to v0.31.1

Author: imreddyTeja

.buildkite/Manifest-v1.11.toml

@@ -5,9 +5,9 @@ manifest_format = "2.0"
 project_hash = "04945e2a7116cfacb2d57340f477dbe23e208227"
 
 [[deps.ADTypes]]
-git-tree-sha1 = "be7ae030256b8ef14a441726c4c37766b90b93a3"
+git-tree-sha1 = "7927b9af540ee964cc5d1b73293f1eb0b761a3a1"
 uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
-version = "1.15.0"
+version = "1.16.0"
 weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"]
 
     [deps.ADTypes.extensions]
@@ -263,10 +263,10 @@ uuid = "179af706-886a-5703-950a-314cd64e0468"
 version = "0.2.1"
 
 [[deps.CPUSummary]]
-deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
-git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec"
+deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"]
+git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab"
 uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
-version = "0.2.6"
+version = "0.2.7"
 
 [[deps.CRC32c]]
 uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc"
@@ -350,9 +350,9 @@ weakdeps = ["SparseArrays"]
 
 [[deps.ClimaAnalysis]]
 deps = ["Artifacts", "Dates", "Interpolations", "NCDatasets", "NaNStatistics", "OrderedCollections", "Reexport", "Statistics", "Unitful"]
-git-tree-sha1 = "79279dce43bac22423b5d7b83fdf8209bf00a331"
+git-tree-sha1 = "2488781691ad571f17dc40b02e5380296a80cd2e"
 uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6"
-version = "0.5.18"
+version = "0.5.19"
 
     [deps.ClimaAnalysis.extensions]
     ClimaAnalysisGeoMakieExt = "GeoMakie"
@@ -366,7 +366,7 @@ version = "0.5.18"
 deps = ["Adapt", "ArgParse", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaInterpolations", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "ForwardDiff", "Insolation", "Interpolations", "LazyArtifacts", "LazyBroadcast", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "NullBroadcasts", "RRTMGP", "Random", "SciMLBase", "SparseMatrixColorings", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.31.0"
+version = "0.31.1"
 
 [[deps.ClimaComms]]
 deps = ["Adapt", "Logging", "LoggingExtras"]
@@ -381,9 +381,9 @@ weakdeps = ["CUDA", "MPI"]
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LazyBroadcast", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "UnrolledUtilities"]
-git-tree-sha1 = "73b0fc9abff1e58f00b59b4ff82d482a35c5e895"
+git-tree-sha1 = "b2fbb5a52601005cf4e7547032d5bf371a2f4a69"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.14.37"
+version = "0.14.38"
 weakdeps = ["CUDA", "Krylov"]
 
     [deps.ClimaCore.extensions]
@@ -420,9 +420,9 @@ weakdeps = ["CUDA"]
 
 [[deps.ClimaParams]]
 deps = ["TOML"]
-git-tree-sha1 = "8f76fb84975762ac8e12fadcb87992b2a92e3966"
+git-tree-sha1 = "690ba306f502a14e145fc2de3537c99e1bd93540"
 uuid = "5c42b081-d73a-476f-9059-fd94b934656c"
-version = "0.10.35"
+version = "0.11.1"
 
 [[deps.ClimaReproducibilityTests]]
 deps = ["OrderedCollections", "PrettyTables"]
@@ -442,9 +442,9 @@ weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "Sta
 
 [[deps.ClimaUtilities]]
 deps = ["Artifacts", "ClimaComms", "Dates"]
-git-tree-sha1 = "420fe76968208ac2eb2837e9e0f0974456ebec78"
+git-tree-sha1 = "4402148693a5096c28cb09e544ce92b049b33e41"
 uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513"
-version = "0.1.24"
+version = "0.1.25"
 weakdeps = ["Adapt", "CUDA", "ClimaCore", "ClimaCoreTempestRemap", "Interpolations", "NCDatasets"]
 
     [deps.ClimaUtilities.extensions]
@@ -461,10 +461,10 @@ uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9"
 version = "0.1.13"
 
 [[deps.CloudMicrophysics]]
-deps = ["ClimaParams", "DocStringExtensions", "ForwardDiff", "LazyArtifacts", "LogExpFunctions", "QuadGK", "RootSolvers", "SpecialFunctions", "StaticArrays", "Thermodynamics"]
-git-tree-sha1 = "8f7137d8bb3098d6c46b2c3f859fb873d5b28abd"
+deps = ["ClimaParams", "DocStringExtensions", "ForwardDiff", "LazyArtifacts", "LogExpFunctions", "RootSolvers", "SpecialFunctions", "StaticArrays", "Thermodynamics"]
+git-tree-sha1 = "755a88a92c3281975eec4da19dbbec8839c607aa"
 uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b"
-version = "0.26.1"
+version = "0.26.2"
 
     [deps.CloudMicrophysics.extensions]
     EmulatorModelsExt = ["DataFrames", "MLJ"]
@@ -537,9 +537,9 @@ version = "1.0.0"
 
 [[deps.Compat]]
 deps = ["TOML", "UUIDs"]
-git-tree-sha1 = "3a3dfb30697e96a440e4149c8c51bf32f818c0f3"
+git-tree-sha1 = "0037835448781bb46feb39866934e243886d756a"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.17.0"
+version = "4.18.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [deps.Compat.extensions]
@@ -638,9 +638,9 @@ version = "1.9.1"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "TruncatedStacktraces"]
-git-tree-sha1 = "52af5ee5af4eb6ca03b3782bf65c1e5fc3024c86"
+git-tree-sha1 = "803ea1b97e06d9f4b0da348589d451c5a456e9f4"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.178.0"
+version = "6.182.1"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
@@ -1139,9 +1139,9 @@ version = "1.4.4"
 
 [[deps.Insolation]]
 deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"]
-git-tree-sha1 = "29e10cf6320739afe5a2b17e9c854a386fef7acc"
+git-tree-sha1 = "adb36f6670ca5a0765ffb4ebfd10c0ae0e56ad71"
 uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8"
-version = "0.9.4"
+version = "0.9.5"
 weakdeps = ["ClimaParams"]
 
     [deps.Insolation.extensions]
@@ -1580,9 +1580,9 @@ version = "2025.2.0+0"
 
 [[deps.MPI]]
 deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"]
-git-tree-sha1 = "892676019c58f34e38743bc989b0eca5bce5edc5"
+git-tree-sha1 = "a61ecf714d71064b766d481ef43c094d4c6e3c52"
 uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-version = "0.20.22"
+version = "0.20.23"
 
     [deps.MPI.extensions]
     AMDGPUExt = "AMDGPU"
@@ -1644,9 +1644,9 @@ version = "1.11.0"
 
 [[deps.MathTeXEngine]]
 deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"]
-git-tree-sha1 = "6e64d2321257cc52f47e193407d0659ea1b2b431"
+git-tree-sha1 = "a370fef694c109e1950836176ed0d5eabbb65479"
 uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53"
-version = "0.6.5"
+version = "0.6.6"
 
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1707,15 +1707,15 @@ version = "0.14.8"
 
 [[deps.NVTX]]
 deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"]
-git-tree-sha1 = "1a24c3430fa2ef3317c4c97fa7e431ef45793bd2"
+git-tree-sha1 = "6b573a3e66decc7fc747afd1edbf083ff78c813a"
 uuid = "5da4648a-3479-48b8-97b9-01cb529c0a1f"
-version = "1.0.0"
+version = "1.0.1"
 
 [[deps.NVTX_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "cd475b587ff77910789a18e68da789fc446a2a05"
+git-tree-sha1 = "af2232f69447494514c25742ba1503ec7e9877fe"
 uuid = "e98f9f5b-d649-5603-91fd-7774390e6439"
-version = "3.2.1+0"
+version = "3.2.2+0"
 
 [[deps.NaNMath]]
 deps = ["OpenLibm_jll"]
@@ -1725,9 +1725,9 @@ version = "1.1.3"
 
 [[deps.NaNStatistics]]
 deps = ["PrecompileTools", "Static", "StaticArrayInterface"]
-git-tree-sha1 = "1d1d52981acffb4d6c30ba64ff927f12d378796a"
+git-tree-sha1 = "473b6054828a4f238d3a8fd71e7ef24d5e68337a"
 uuid = "b946abbf-3ea7-4610-9019-9858bfdeaf2d"
-version = "0.6.53"
+version = "0.6.54"
 
     [deps.NaNStatistics.extensions]
     NaNStatisticsDimensionalDataExt = "DimensionalData"
@@ -1828,9 +1828,9 @@ version = "5.0.8+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "87510f7292a2b21aeff97912b0898f9553cc5c2c"
+git-tree-sha1 = "2ae7d4ddec2e13ad3bddf5c0796f7547cf682391"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.5.1+0"
+version = "3.5.2+0"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
@@ -2033,9 +2033,9 @@ version = "1.11.0"
 
 [[deps.RRTMGP]]
 deps = ["Adapt", "Artifacts", "ClimaComms", "DocStringExtensions", "Random"]
-git-tree-sha1 = "a31317fc4ecfa4824e30c6570af6e0d31e3bb70b"
+git-tree-sha1 = "25c75d0863aee5ce2acfeee3c420712015418c98"
 uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-version = "0.21.3"
+version = "0.21.4"
 weakdeps = ["CUDA", "ClimaParams", "NCDatasets"]
 
     [deps.RRTMGP.extensions]
@@ -2083,9 +2083,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "4dd1a95cc16d5abdccc4eac5faf6bc73904be1a2"
+git-tree-sha1 = "f8726bd5a8b7f5f5d3f6c0ce4793454a599b5243"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.35.0"
+version = "3.36.0"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
@@ -2142,9 +2142,9 @@ version = "0.5.1+0"
 
 [[deps.RootSolvers]]
 deps = ["ForwardDiff", "Printf"]
-git-tree-sha1 = "892b77767827af30868111d257930f567d5d78f8"
+git-tree-sha1 = "75b130d104fb3d9d39a5c784fad23aebc7d7d956"
 uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74"
-version = "0.4.4"
+version = "1.0.0"
 
 [[deps.RoundingEmulator]]
 git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b"
@@ -2174,9 +2174,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "c9dc4c04bcb0146a35dd6af726073c5738b80e3b"
+git-tree-sha1 = "c056c723b68700fec386dfde8c577089df720c8e"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.104.0"
+version = "2.108.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2269,9 +2269,9 @@ version = "0.4.0"
 
 [[deps.SimpleTraits]]
 deps = ["InteractiveUtils", "MacroTools"]
-git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
+git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb"
 uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d"
-version = "0.9.4"
+version = "0.9.5"
 
 [[deps.Sixel]]
 deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"]
@@ -2309,9 +2309,9 @@ version = "1.11.0"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
+git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.2.1"
+version = "1.2.2"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -2320,15 +2320,17 @@ version = "1.11.0"
 
 [[deps.SparseMatrixColorings]]
 deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"]
-git-tree-sha1 = "ab958b4fec46d1f1d057bb8e2a99bfdb90744646"
+git-tree-sha1 = "9de43e0b9b976f1019bf7a879a686c4514520078"
 uuid = "0a514795-09f3-496d-8182-132a7b665d35"
-version = "0.4.20"
+version = "0.4.21"
 
     [deps.SparseMatrixColorings.extensions]
+    SparseMatrixColoringsCUDAExt = "CUDA"
     SparseMatrixColoringsCliqueTreesExt = "CliqueTrees"
     SparseMatrixColoringsColorsExt = "Colors"
 
     [deps.SparseMatrixColorings.weakdeps]
+    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
     CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8"
     Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
 
@@ -2405,9 +2407,9 @@ version = "1.7.1"
 
 [[deps.StatsBase]]
 deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "b81c5035922cc89c2d9523afc6c54be512411466"
+git-tree-sha1 = "2c962245732371acd51700dbb268af311bddd719"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.34.5"
+version = "0.34.6"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
@@ -2467,9 +2469,9 @@ version = "7.7.0+0"
 
 [[deps.SurfaceFluxes]]
 deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"]
-git-tree-sha1 = "aee530bde85cd41374273568cb649e72d82921e7"
+git-tree-sha1 = "eb96fea9de18a3935a836ee8634af3c126d6b77f"
 uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f"
-version = "0.12.0"
+version = "0.12.1"
 weakdeps = ["ClimaParams"]
 
     [deps.SurfaceFluxes.extensions]
@@ -2539,10 +2541,10 @@ uuid = "b718987f-49a8-5099-9789-dcd902bef87d"
 version = "1.0.2"
 
 [[deps.Thermodynamics]]
-deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"]
-git-tree-sha1 = "bff801ad0a9bbb5c1bf38ffe89a83907a1b145cd"
+deps = ["DocStringExtensions", "ForwardDiff", "KernelAbstractions", "Random", "RootSolvers"]
+git-tree-sha1 = "edce99e94489c25f5c7f5b4065c06ffb5adb1317"
 uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c"
-version = "0.12.15"
+version = "0.13.1"
 weakdeps = ["ClimaParams"]
 
     [deps.Thermodynamics.extensions]
@@ -2620,9 +2622,9 @@ version = "0.4.1"
 
 [[deps.Unitful]]
 deps = ["Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "d2282232f8a4d71f79e85dc4dd45e5b12a6297fb"
+git-tree-sha1 = "6258d453843c466d84c17a58732dda5deeb8d3af"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.23.1"
+version = "1.24.0"
 weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"]
 
     [deps.Unitful.extensions]

NEWS.md

@@ -3,6 +3,10 @@ ClimaAtmos.jl Release Notes
 
 main
 -------
+
+v0.31.1
+-------
+
 PR [#3917](https://github.com/CliMA/ClimaAtmos.jl/pull/3917) adds common numercis configs for different resolutions. 
 These configurations are intended to serve as the default settings. Please modify them only if you are certain of the implications.
 

Project.toml

@@ -1,7 +1,7 @@
 name = "ClimaAtmos"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 authors = ["Climate Modeling Alliance"]
-version = "0.31.0"
+version = "0.31.1"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
@@ -47,7 +47,7 @@ ClimaComms = "0.6.9"
 ClimaCore = "0.14.37"
 ClimaDiagnostics = "0.2.12"
 ClimaInterpolations = "0.1.0"
-ClimaParams = "0.10.35"
+ClimaParams = "0.10.35, 0.11"
 ClimaTimeSteppers = "0.8.2"
 ClimaUtilities = "0.1.23"
 CloudMicrophysics = "0.26.1"
@@ -69,7 +69,7 @@ SparseMatrixColorings = "0.4.20"
 StaticArrays = "1.9"
 Statistics = "1"
 SurfaceFluxes = "0.11, 0.12"
-Thermodynamics = "0.12.14"
+Thermodynamics = "0.12.14, 0.13"
 UnrolledUtilities = "0.1.9"
 YAML = "0.4"
 julia = "1.9"

reproducibility_tests/ref_counter.jl

@@ -1,4 +1,4 @@
-252
+253
 
 # **README**
 #
@@ -20,6 +20,9 @@
 
 
 #=
+252
+- Update deps, specifically RootSolvers.jl
+
 252
 - Limit the noise in ice and snow 1M microphysics scheme in cloud formation and
   limiter formulation.