diff --git a/medcat-model-distributor/webapp/requirements.txt b/medcat-model-distributor/webapp/requirements.txt index 495a7c685..d78de5977 100644 --- a/medcat-model-distributor/webapp/requirements.txt +++ b/medcat-model-distributor/webapp/requirements.txt @@ -1,6 +1,6 @@ -Django==3.2.25 +Django==4.2.29 django-dbbackup==4.0.0b0 django-storages[boto3]==1.12.3 django-cron==0.5.1 -urllib3==1.26.18 +urllib3==2.6.3 requests diff --git a/medcat-scripts/requirements-dev.txt b/medcat-scripts/requirements-dev.txt index 65cceb5aa..fbc83f2a8 100644 --- a/medcat-scripts/requirements-dev.txt +++ b/medcat-scripts/requirements-dev.txt @@ -2,7 +2,7 @@ mypy pytest pytest-xdist nbmake<1.5 -nbconvert<6 +nbconvert<8 jupyter-client ipykernel plotly-stubs; python_version >= '3.10' diff --git a/medcat-service/requirements.txt b/medcat-service/requirements.txt index a6369294d..b07687624 100644 --- a/medcat-service/requirements.txt +++ b/medcat-service/requirements.txt @@ -4,12 +4,12 @@ simplejson==3.19.3 setuptools-rust==1.11.0 medcat[meta-cat,spacy,deid]~=2.6.0 # pinned because of issues with de-id models and past models (it will not do any de-id) -transformers>=4.34.0,<5.0.0 -requests==2.32.4 +transformers>=4.34.0,<6.0.0 +requests==2.33.0 fastapi[standard]==0.128.0 pydantic>=2.11.10,<2.12.5 pydantic-settings==2.10.1 -gradio[mcp]==6.5.1 +gradio[mcp]==6.7.0 prometheus-fastapi-instrumentator==7.1.0 opentelemetry-distro[otlp]==0.60b0 opentelemetry-instrumentation==0.60b0 diff --git a/medcat-v2/pyproject.toml b/medcat-v2/pyproject.toml index 26179a9b6..a6025f7f2 100644 --- a/medcat-v2/pyproject.toml +++ b/medcat-v2/pyproject.toml @@ -91,7 +91,7 @@ spacy = [ "spacy", ] meta_cat = [ - "transformers>=4.41.0,<5.0", # avoid major bump + "transformers>=4.41.0,<6.0", # avoid major bump "peft>0.8.2,<1.0", "torch>=2.4.0,<3.0", "scikit-learn>=1.1.3,<2.0", @@ -104,7 +104,7 @@ dict_ner = [ ] deid = [ "datasets>=2.2.2,<3.0.0", - "transformers>=4.41.0,<5.0", # avoid major bump + "transformers>=4.41.0,<6.0", # avoid major bump "scikit-learn>=1.1.3,<2.0", "torch>=2.4.0,<3.0", # since 3.13 we need to use later version of scipy for it @@ -112,12 +112,12 @@ deid = [ "scipy>=1.14; python_version >= '3.13'", ] rel_cat = [ - "transformers>=4.41.0,<5.0", # avoid major bump + "transformers>=4.41.0,<6.0", # avoid major bump "scikit-learn>=1.1.3,<2.0", "torch>=2.4.0,<3.0", ] embed_linker = [ - "transformers>=4.41.0,<5.0", # avoid major bump + "transformers>=4.41.0,<6.0", # avoid major bump "torch>=2.4.0,<3.0", ] test = [] # TODO - list diff --git a/v1/medcat-tutorials/requirements-dev.txt b/v1/medcat-tutorials/requirements-dev.txt index 3a61643ee..1fc28724d 100644 --- a/v1/medcat-tutorials/requirements-dev.txt +++ b/v1/medcat-tutorials/requirements-dev.txt @@ -3,8 +3,8 @@ pandas<2.0.0 seaborn~=0.11.2 pytest-xdist~=2.5.0 nbmake<1.5 -nbconvert<6 -jinja2<=3.0 +nbconvert<8 +jinja2<=3.1.6 matplotlib>=3.4.0,<3.8.0 seaborn ipython<9.0.0 diff --git a/v1/medcat/docs/requirements.txt b/v1/medcat/docs/requirements.txt index 5e0563461..6f1225684 100644 --- a/v1/medcat/docs/requirements.txt +++ b/v1/medcat/docs/requirements.txt @@ -5,7 +5,7 @@ sphinx-autoapi~=3.0.0 MarkupSafe==3.0.2 accelerate==1.2.1 aiofiles==24.1.0 -aiohttp==3.11.11 +aiohttp==3.13.3 aiosignal==1.3.2 asttokens==3.0.0 async-timeout==5.0.1 @@ -25,7 +25,7 @@ decorator==5.1.1 dill==0.3.8 exceptiongroup==1.2.2 executing==2.1.0 -filelock==3.16.0 +filelock==3.20.3 flake8==7.0.0 frozenlist==1.5.0 fsspec==2024.6.1 @@ -35,7 +35,7 @@ idna==3.10 ipython==8.31.0 ipywidgets==8.1.5 jedi==0.19.2 -jinja2==3.1.5 +jinja2==3.1.6 joblib==1.4.2 jsonpickle==4.0.1 jupyterlab-widgets==3.0.13 @@ -71,7 +71,7 @@ python-dateutil==2.9.0 pytz==2024.2 pyyaml==6.0.2 regex==2024.11.6 -requests==2.32.3 +requests==2.33.0 safetensors==0.4.5 scikit-learn==1.6.0 scipy==1.13.1 @@ -87,10 +87,10 @@ thinc==8.2.5 threadpoolctl==3.5.0 tokenizers==0.21.0 tomli==2.2.1 -torch==2.5.1 +torch==2.8.0 tqdm==4.67.1 traitlets==5.14.3 -transformers==4.51.3 +transformers==4.53.0 triton==3.1.0 typer==0.15.1 types-PyYAML==6.0.3 @@ -98,7 +98,7 @@ types-aiofiles==0.8.3 types-setuptools==57.4.10 typing-extensions==4.12.2 tzdata==2024.2 -urllib3==2.3.0 +urllib3==2.6.3 wasabi==1.1.3 wcwidth==0.2.13 widgetsnbextension==4.0.13