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Merge pull request #2 from Future-House/add-oss
Adding robin repo + tooling
2 parents 5889ccf + 54ef196 commit edeecd7

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‎.github/renovate.json5‎

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{
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$schema: "https://docs.renovatebot.com/renovate-schema.json",
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extends: [
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"config:recommended",
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"group:allNonMajor", // Rely on config:recommended for major version updates
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":automergeMinor",
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],
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schedule: ["* 2 1-7 * 1"],
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prHourlyLimit: 4,
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timezone: "America/Los_Angeles",
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rangeStrategy: "widen",
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lockFileMaintenance: {
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enabled: true,
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schedule: ["* 2 1-7 * 1"], // Work around https://github.com/renovatebot/renovate/discussions/33152
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},
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minimumReleaseAge: "2 weeks",
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"pre-commit": { enabled: true },
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}

‎.github/workflows/build.yml‎

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name: Publish
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on:
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release:
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types: [created]
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workflow_dispatch:
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jobs:
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publish:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- id: build
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uses: hynek/build-and-inspect-python-package@v2
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- name: Download built artifact to dist/
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uses: actions/download-artifact@v4
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with:
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name: ${{ steps.build.outputs.artifact-name }}
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path: dist

‎.github/workflows/tests.yml‎

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name: Lint and Test
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on:
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push:
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branches: [main]
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pull_request:
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workflow_dispatch:
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jobs:
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pre-commit:
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runs-on: ubuntu-latest
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if: github.event_name == 'pull_request' # pre-commit-ci/lite-action only runs here
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strategy:
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matrix:
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python-version: [3.12] # Our min supported Python versions
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # For setuptools-scm, replace with fetch-tags after https://github.com/actions/checkout/issues/1471
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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- uses: pre-commit/[email protected]
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- uses: pre-commit-ci/[email protected]
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if: always()
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lint:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.12] # Our min supported Python version
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steps:
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- uses: actions/checkout@v4
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- uses: astral-sh/setup-uv@v5
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with:
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enable-cache: true
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- run: uv python pin ${{ matrix.python-version }}
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- uses: hynek/build-and-inspect-python-package@v2
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- run: uv sync --python-preference=only-managed
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- run: uv run pylint robin
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- uses: suzuki-shunsuke/[email protected]
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test:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [3.12] # Our min supported Python versions
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steps:
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- uses: actions/checkout@v4
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- uses: astral-sh/setup-uv@v5
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with:
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enable-cache: true
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- run: uv python pin ${{ matrix.python-version }}
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- run: uv sync --python-preference=only-managed
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env:
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OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
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FUTUREHOUSE_API_KEY: ${{ secrets.FUTUREHOUSE_API_KEY }}

‎.gitignore‎

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hypothesis_logs/
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*.log
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logs/
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__pycache__/
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generated_hypotheses/
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function_calling_results/
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hypothesis_results/*
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AG4/*
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# Development Environment
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.env
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.env.*
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.tmp/
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tmp/
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temp.ipynb
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output.txt
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# Playwright output
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playwright-report/

‎.mailmap‎

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Benjamin Chang <[email protected]> changbenjamin

‎.pre-commit-config.yaml‎

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default_language_version:
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python: python3
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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v5.0.0
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hooks:
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- id: check-added-large-files
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exclude: |
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(?x)^(
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examples/.*|
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robin_output/.*
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)$
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- id: check-byte-order-marker
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- id: check-case-conflict
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- id: check-merge-conflict
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- id: check-shebang-scripts-are-executable
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- id: check-symlinks
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- id: check-toml
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- id: check-yaml
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- id: debug-statements
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- id: detect-private-key
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- id: end-of-file-fixer
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- id: mixed-line-ending
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- id: trailing-whitespace
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- repo: https://github.com/astral-sh/ruff-pre-commit
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rev: v0.11.2
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hooks:
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- id: ruff
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args: [--fix, --exit-non-zero-on-fix]
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- repo: https://github.com/psf/black-pre-commit-mirror
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rev: 25.1.0
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hooks:
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- id: black-jupyter
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- repo: https://github.com/rbubley/mirrors-prettier
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rev: v3.5.3
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hooks:
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- id: prettier
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exclude: robin_output
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- repo: https://github.com/pappasam/toml-sort
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rev: v0.24.2
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hooks:
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- id: toml-sort-fix
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- repo: https://github.com/crate-ci/typos
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rev: v1.30.3
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hooks:
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- id: typos
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- repo: https://github.com/jumanjihouse/pre-commit-hooks
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rev: 3.0.0
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hooks:
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- id: check-mailmap
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- repo: https://github.com/henryiii/validate-pyproject-schema-store
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rev: 2025.03.24
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hooks:
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- id: validate-pyproject
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- repo: https://github.com/astral-sh/uv-pre-commit
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rev: 0.6.10
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hooks:
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- id: uv-lock
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- repo: https://github.com/adamchainz/blacken-docs
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rev: 1.19.1
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hooks:
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- id: blacken-docs
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exclude: \.md$ # The generated markdown files are being blackened by jupytext
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- repo: https://github.com/srstevenson/nb-clean
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rev: 4.0.1
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hooks:
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- id: nb-clean
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args: [--preserve-cell-outputs, --remove-empty-cells]
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- repo: https://github.com/mwouts/jupytext
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rev: v1.17.0rc2
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hooks:
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- id: jupytext
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args: [--to, md, --pipe, black]
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additional_dependencies: [black]
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files: ^docs/.*\.ipynb$
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- repo: https://github.com/jsh9/markdown-toc-creator
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rev: 0.0.10
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hooks:
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- id: markdown-toc-creator
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- repo: https://github.com/pre-commit/mirrors-mypy
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rev: v1.15.0
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hooks:
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- id: mypy
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args: [--pretty, --ignore-missing-imports]
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additional_dependencies:
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- anthropic
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- fhaviary
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- fhlmi
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- openai>=1 # Match pyproject.toml
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- pandas-stubs
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- pydantic>=2 # Match pyproject.toml
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- types-aiofiles
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- types-PyYAML
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- types-setuptools
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- types-tqdm

‎CITATION.cff‎

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cff-version: 1.2.0
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message: >-
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If you use this software, please cite it using the
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metadata from this file.
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title: "Robin: A multi-agent system for automating scientific discovery"
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authors:
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- given-names: Ali Essam
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family-names: Ghareeb
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- given-names: Benjamin
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family-names: Chang
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- given-names: Ludovico
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family-names: Mitchener
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- given-names: Angela
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family-names: Yiu
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- given-names: Caralyn J.
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family-names: Szostkiewicz
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- given-names: Jon M.
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family-names: Laurent
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- given-names: Muhammed T.
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family-names: Razzak
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- given-names: Andrew D.
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family-names: White
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- given-names: Michaela M.
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family-names: Hinks
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- given-names: Samuel G.
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family-names: Rodriques
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identifiers:
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- type: doi
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value: 10.48550/arXiv.2505.13400
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description: ArXiv DOI
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- type: url
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value: https://arxiv.org/abs/2505.13400
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description: ArXiv abstract
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repository-code: https://github.com/Future-House/robin
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keywords:
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- Artificial Intelligence
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- Multiagent Systems
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- Quantitative Methods
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- Scientific Discovery
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- Drug Discovery
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license: Apache-2.0
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date-released: 2025-05-19
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preferred-citation:
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type: article
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title: "Robin: A multi-agent system for automating scientific discovery"
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authors:
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- given-names: Ali Essam
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family-names: Ghareeb
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- given-names: Benjamin
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family-names: Chang
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- given-names: Ludovico
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family-names: Mitchener
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- given-names: Angela
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family-names: Yiu
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- given-names: Caralyn J.
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family-names: Szostkiewicz
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- given-names: Jon M.
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family-names: Laurent
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- given-names: Muhammed T.
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family-names: Razzak
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- given-names: Andrew D.
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family-names: White
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- given-names: Michaela M.
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family-names: Hinks
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- given-names: Samuel G.
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family-names: Rodriques
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date-published: 2025-05-19
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doi: 10.48550/arXiv.2505.13400
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journal: arXiv preprint
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url: https://arxiv.org/abs/2505.13400

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