PhosNetVis/covid-vis.html at main · GumusLab/PhosNetVis · GitHub

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<head>
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    <title>COVID 3D</title>

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          <option value="">Node Query</option>
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    <div id="infoTop">
      <p id="nodeName" style="font-family: CenturyGothicPro-Bold; margin:6px;">Node: <a id = "nodehref" href="https://www.w3schools.com" target="_blank" style="color: #00709d;">placeholder1</a>   <img style = "width: 20px; margin-bottom: 5px;" src="https://www.phosphosite.org/images/header/logo_psp_white_cp.png"/></p>
      <p id = "nodeType" style="font-family: CenturyGothicPro-Bold; margin:6px;">Type: <a id="typetext">placeholder2</a> <a id="activityText">|  Activity: </a> <a id="activityNum">10 </a></p>
      <p style="font-family: CenturyGothicPro-Bold; margin:6px;"> <u>Phosphorylation Info</u> <h style="font-family: CenturyGothicPro-Bold; font-size: 12px;">*(scrollable)</h></p>
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              <th style="background-color:rgba(240, 240, 240, .8);">Site</th>
              <th style="background-color:rgba(240, 240, 240, .8)">log2FC</th>
              <th style="background-color:rgba(240, 240, 240, .8)">pValue</th>
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          <path d="M 3.065736770629883 2.5 L 0.9342633485794067 2.5 L 2 0.9013950228691101 L 3.065736770629883 2.5 Z" stroke="none"/>
          <path d="M 2 0 L 4 3 L 0 3 L 2 0 Z" stroke="none" fill="#363535"/>
        </g>
        <line id="Line_192" data-name="Line 192" x2="17" transform="translate(39 105)" fill="none" stroke="#363535" stroke-width="1"/>
        <g id="Polygon_6" data-name="Polygon 6" transform="matrix(-0.358, 0.934, -0.934, -0.358, 58.388, 110.3)" fill="#fff">
          <path d="M 3.065736532211304 2.5 L 0.9342632293701172 2.5 L 1.99999988079071 0.9013950228691101 L 3.065736532211304 2.5 Z" stroke="none"/>
          <path d="M 1.99999988079071 0 L 4 3 L -2.384185791015625e-07 3 L 1.99999988079071 0 Z" stroke="none" fill="#363535"/>
        </g>
        <line id="Line_193" data-name="Line 193" x2="17" transform="matrix(0.934, 0.358, -0.358, 0.934, 39, 105)" fill="none" stroke="#363535" stroke-width="1"/>
        <g id="Polygon_7" data-name="Polygon 7" transform="translate(56.953 95.791) rotate(69)" fill="#fff">
          <path d="M 3.065761566162109 2.499997138977051 L 0.9342533349990845 2.499997138977051 L 2.000007390975952 0.9013741612434387 L 3.065761566162109 2.499997138977051 Z" stroke="none"/>
          <path d="M 2.000007390975952 -2.622604370117188e-06 L 4.000017166137695 2.999997138977051 L -2.384185791015625e-06 2.999997138977051 L 2.000007390975952 -2.622604370117188e-06 Z" stroke="none" fill="#363535"/>
        </g>
        <line id="Line_194" data-name="Line 194" x2="17" transform="translate(39 104.825) rotate(-21)" fill="none" stroke="#363535" stroke-width="1"/>
      </svg>
    </div>

  <!-- LEGEND NUMBERS -->
  <div id = "legendNumbers">
    <p id="p1" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:26px; z-index:150; font-size: 20; bottom:220px">&ndash;</p>
    <p id="p2" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:98px; z-index:150; font-size: 20; bottom:220px">&ndash;</p>

    <p id="s1" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:26px; z-index:150;font-size: 20; bottom:140px">&ndash;</p>
    <p id="s2" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:98px; z-index:150;font-size: 20; bottom:140px">&ndash;</p>

    <p id="c1" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:26px; z-index:150;font-size: 20; bottom:70px">&ndash;</p>
    <p id="c2" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:98px; z-index:150;font-size: 20; bottom:70px">&ndash;</p>

    <p id="w1" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:26px; z-index:150;font-size: 20; bottom:-12px">&ndash;</p>
    <p id="w2" style = "font-family:'CenturyGothicPro-Bold'; position:absolute; right:98px; z-index:150;font-size: 20; bottom:-12px">&ndash;</p>
  </div>

  <!-- LEGEND REMOVERS -->
  <div id="legendRemovers">
  <div id="nodeColorRemover">
    <svg xmlns="http://www.w3.org/2000/svg" width="119px"  style="z-index: 151; position: absolute;right: 5px; bottom: 240px;" viewBox="0 0 95 61">
      <rect id="Rectangle_1579" data-name="Rectangle 1579" width="95" height="61" rx="15" fill="rgba(255,255,255,0.85)"/>
    </svg>
  </div>

  <div id="nodeSizeRemover">
    <svg xmlns="http://www.w3.org/2000/svg" width="119px"  style="z-index: 151; position: absolute;right: 5px; bottom: 160px;" viewBox="0 0 95 61">
      <rect id="Rectangle_1579" data-name="Rectangle 1579" width="95" height="61" rx="15" fill="rgba(255,255,255,0.85)"/>
    </svg>
  </div>

  <div id="edgeColorRemover">
    <svg xmlns="http://www.w3.org/2000/svg" width="119px"  style="z-index: 151; position: absolute;right: 5px; bottom: 80px;" viewBox="0 0 95 61">
      <rect id="Rectangle_1579" data-name="Rectangle 1579" width="95" height="61" rx="15" fill="rgba(255,255,255,0.85)"/>
    </svg>
  </div>

  <div id="edgeWeightRemover">
    <svg xmlns="http://www.w3.org/2000/svg" width="119px"  style="z-index: 151; position: absolute;right: 5px; bottom: 10px;" viewBox="0 0 95 61">
      <rect id="Rectangle_1579" data-name="Rectangle 1579" width="95" height="61" rx="15" fill="rgba(255,255,255,0.85)"/>
    </svg>
  </div>
  </div>

  <div id="3d-graph" class="full-height"> </div>

  <div id = "footer" style="font-family: CenturyGothicPro; z-index: 1000;">
      <span style="font-size:0.8vw;color:#6f6f6f;"> Left-click: rotate, Mouse-wheel: zoom, Right-click: pan, Double-click on node: node info, Double-click on background: reset view  </span>
  </div>

  <a href="#"  id="downloadbtn" style="display: none; width: 0px; height: 0px;"><button> Download Video </button></a>


  <script>

  /////////////////////////////////////////////////
  ///// ENTER AND EXIT FULLSCREEN FUNCTIONS //////
  ///////////////////////////////////////////////
  function fullscreen() {
      let isInFullScreen = (document.fullscreenElement && document.fullscreenElement !== null) ||
          (document.webkitFullscreenElement && document.webkitFullscreenElement !== null) ||
          (document.mozFullScreenElement && document.mozFullScreenElement !== null) ||
          (document.msFullscreenElement && document.msFullscreenElement !== null);

      let docElm = document.documentElement;
      if (!isInFullScreen) {
          if (docElm.requestFullscreen) {
              docElm.requestFullscreen();
          } else if (docElm.mozRequestFullScreen) {
              docElm.mozRequestFullScreen();
          } else if (docElm.webkitRequestFullScreen) {
              docElm.webkitRequestFullScreen();
          } else if (docElm.msRequestFullscreen) {
              docElm.msRequestFullscreen();
          }
      } else {
          if (document.exitFullscreen) {
              document.exitFullscreen();
          } else if (document.webkitExitFullscreen) {
              document.webkitExitFullscreen();
          } else if (document.mozCancelFullScreen) {
              document.mozCancelFullScreen();
          } else if (document.msExitFullscreen) {
              document.msExitFullscreen();
          }
      }
  }

  ////////////////////////////////////////////////
  // DOUBLE CLICK IMPLEMENTATION FOR NODE CLICK //
  ////////////////////////////////////////////////
  var doubleclick = false
  window.addEventListener("dblclick", event => {doubleclick = true})
  setInterval(myTimer, 100);
  function myTimer() {doubleclick = false}

  ////////////////////////////////////////////////
  // HIDE SHOW LEGEND AND MENU IMPLEMENTATIONS ///
  ////////////////////////////////////////////////

  function hideShowLegend(val){
    if(val === 0 || val === undefined){
      document.getElementById("legendPlace").style.display = "none";
      document.getElementById("legendNumbers").style.display = "none";
      document.getElementById("legendRemovers").style.display = "none";
      document.getElementById("dropdown").value = 1;
      document.getElementById("dropbtn").style.transform = "rotate(180deg)";
      document.getElementById("dropdown").style.right = "0px";
      document.getElementById("dropdown-content").style.left = "-71px";
      document.getElementById("dropdown-content").innerHTML = '<svg xmlns="http://www.w3.org/2000/svg" width="70" viewBox="0 0 75 11"> <text id="show_legend" data-name="show legend" transform="translate(32 8)" fill="#5e6365" font-size="12" font-family="CenturyGothicPro, Century Gothic Pro"><tspan x="-31.145" y="0">show legend</tspan></text> </svg>'
    }
    else{
      document.getElementById("legendPlace").style.display = "block";
      document.getElementById("legendNumbers").style.display = "block";
      document.getElementById("legendRemovers").style.display = "block";
      document.getElementById("dropdown").value = 0;
      document.getElementById("dropbtn").style.transform = "rotate(0deg)";
      document.getElementById("dropdown").style.right = "85px";
      document.getElementById("dropdown-content").style.left = "25px";
      document.getElementById("dropdown-content").innerHTML = '<svg xmlns="http://www.w3.org/2000/svg" width="70" viewBox="0 0 75 11"> <text id="hide_legend" data-name="hide legend" transform="translate(30 8)" fill="#5e6365" font-size="12" font-family="CenturyGothicPro, Century Gothic Pro"><tspan x="-29.45" y="0">hide legend</tspan></text> </svg>'
    }
  }

  function hideShowMenu(val) {
    if(val===0 || val === undefined){
      // document.getElementById("nqText").style.display = "none";
      document.getElementById("nodequeryMain").style.display = "none";
      document.getElementById("openbutton-content").innerHTML = '<svg xmlns="http://www.w3.org/2000/svg" width="80px" viewBox="0 0 81 11"> <text id="close_controls" data-name="close controls" transform="translate(30 8)" fill="#5e6365" font-size="12" font-family="CenturyGothicPro, Century Gothic Pro"><tspan x="-29.45" y="0">open controls</tspan></text> </svg>';
      document.getElementById("openbutton-button").innerHTML = '<svg xmlns="http://www.w3.org/2000/svg" width="20px" viewBox="0 0 13 13"> <g id="Rectangle_1582" data-name="Rectangle 1582" fill="#fff" stroke="#2e3137" stroke-width="1"> <rect width="13" height="13" stroke="none"/> <rect x="0.5" y="0.5" width="12" height="12" fill="none"/> </g> <line id="Line_201" data-name="Line 201" x2="6.5" transform="translate(3.25 4.5)" fill="none" stroke="#2e3137" stroke-width="1.2"/> <line id="Line_202" data-name="Line 202" x2="6.5" transform="translate(3.25 6.5)" fill="none" stroke="#2e3137" stroke-width="1.2"/> <line id="Line_203" data-name="Line 203" x2="6.5" transform="translate(3.25 8.5)" fill="none" stroke="#2e3137" stroke-width="1.2"/> </svg> '
      document.getElementById("openbutton").value = 1;
      document.getElementById("guiplace").style.display = "none";

    }
    else{
      // document.getElementById("nqText").style.display = "block";
      document.getElementById("nodequeryMain").style.display = "block";
      document.getElementById("openbutton-content").innerHTML = ''
      document.getElementById("openbutton-button").innerHTML = '<svg xmlns="http://www.w3.org/2000/svg" width="20px" viewBox="0 0 13 16"> <g id="Rectangle_1581" data-name="Rectangle 1581" transform="translate(0 1)" fill="#fff" stroke="#2e3137" stroke-width="1"> <rect width="13" height="13" stroke="none"/> <rect x="0.5" y="0.5" width="12" height="12" fill="none"/> </g> <text id="x" transform="translate(6.5 11)" fill="#9f9f9f" stroke="#2e3137" stroke-width="1" font-size="14" font-family="CenturyGothicPro-Bold, Century Gothic Pro" font-weight="700"><tspan x="-3.92" y="0">x</tspan></text> </svg>'
      document.getElementById("openbutton").value = 0;
      document.getElementById("guiplace").style.display = "block";
    }
  }
  ////////////////////////////////////////////////
  //////////////// DATA CREATION ////////////////
  ///////////////////////////////////////////////

  function linkExist(sourceTargetTuples,kinaseID,targetID){
    for (let idx = 0; idx < sourceTargetTuples.length; idx++) {
      currTuple = sourceTargetTuples[idx]
      if (currTuple[0] === kinaseID && currTuple[1] === targetID){
        return true
      }
    }
  return false
  }

var file_names = ["time 00hr - control", "time 02hr", "time 04hr", "time 08hr", "time 12hr", "time 24hr"]
var allFiles = [time00_network, time02_network, time04_network, time08_network, time12_network, time24_network]
var index = sessionStorage.getItem("covididx")
var finalDataObj = null
if(index==0 || index == undefined){finalDataObj = JSON.parse(JSON.stringify(time00_network))}
else if(index==1){finalDataObj = JSON.parse(JSON.stringify(time02_network))}
else if(index==2){finalDataObj = JSON.parse(JSON.stringify(time04_network))}
else if(index==3){finalDataObj = JSON.parse(JSON.stringify(time08_network))}
else if(index==4){finalDataObj = JSON.parse(JSON.stringify(time12_network))}
else if(index==5){finalDataObj = JSON.parse(JSON.stringify(time24_network))}

const CAMERA_DISTANCE2NODES_FACTOR = 170;


  function thresholdDecider(DataObj){

    let nodeSizes = (DataObj["nodes"].map(el => el.nodeSize)).filter(x => x != undefined)
    let nodeColors = ((DataObj["nodes"].map(el => el.nodeColors)).flat()).filter(x => x != undefined)
    let nodeSizeRange = [Math.min.apply(Math, nodeSizes), Math.max.apply(Math, nodeSizes)]
    let nodeColorRange = [Math.min.apply(Math, nodeColors), Math.max.apply(Math, nodeColors)]
    let nodeColorThreshold = null

    if (nodeColorRange[0] != undefined && nodeColorRange[1] != undefined){
      let minPositive = 0
      let maxPositive = 0
      nodeColorRange[0]<0 ? minPositive = - nodeColorRange[0] : minPositive = nodeColorRange[0]
      nodeColorRange[1]<0 ? maxPositive = - nodeColorRange[1] : maxPositive = nodeColorRange[1]
      minPositive>maxPositive  ? nodeColorThreshold = minPositive : nodeColorThreshold = maxPositive
    }

    let edgeWeights = (DataObj["links"].map(el => el.edgeWeight)).filter(x => x != undefined)
    let edgeColors = (DataObj["links"].map(el => el.edgeColor)).filter(x => x != undefined)
    let edgeWeightRange = [Math.min.apply(Math, edgeWeights), Math.max.apply(Math, edgeWeights)]
    let edgeColorRange = [Math.min.apply(Math, edgeColors), Math.max.apply(Math, edgeColors)]

    return {"nodeSizes":nodeSizes, "nodeColors":nodeColors, "nodeSizeRange":nodeSizeRange, "nodeColorRange":nodeColorRange, "nodeColorThreshold":nodeColorThreshold, "edgeWeights":edgeWeights, "edgeColors":edgeColors, "edgeWeightRange":edgeWeightRange, "edgeColorRange":edgeColorRange}

  }

  var thresholds = thresholdDecider(finalDataObj)
  var [nodeSizes, nodeColors, nodeSizeRange, nodeColorRange, nodeColorThreshold, edgeWeights, edgeColors, edgeWeightRange, edgeColorRange] = [thresholds["nodeSizes"], thresholds["nodeColors"], thresholds["nodeSizeRange"], thresholds["nodeColorRange"], thresholds["nodeColorThreshold"], thresholds["edgeWeights"],thresholds["edgeColors"],thresholds["edgeWeightRange"],thresholds["edgeColorRange"]]

  var nodesList = finalDataObj["ids"]


  const searchNodes = new Set();
  const searchLinks = new Set();

  /////////////////////////////////////////////////
  ///////// LEGEND IMPLEMENTATION /////////////////
  /////////////////////////////////////////////////

  function nodeColorLegend(phosOption){
    if(nodeColorThreshold != null && nodeColorThreshold != Infinity && nodeColorThreshold != NaN && phosOption === "Show"){
    let nodeColorThresholdL = nodeColorThreshold > 3 ? 3 : nodeColorThreshold
    document.getElementById("p1").innerHTML = Number(-nodeColorThresholdL).toFixed(2)
    document.getElementById("p2").innerHTML = Number(nodeColorThresholdL).toFixed(2)
    document.getElementById("p1").style.bottom ="225px"
    document.getElementById("p2").style.bottom = "225px"
    document.getElementById("p1").style.right = "85px"
    document.getElementById("p2").style.right = "15px"
    document.getElementById("p1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("p2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("p1").style.fontSize = 15
    document.getElementById("p2").style.fontSize = 15
    document.getElementById("nodeColorRemover").style.display = "none"
  }
  else{
    if(searchNodes.size === 0 || animationActive) {
    document.getElementById("p1").innerHTML = "&ndash;"
    document.getElementById("p2").innerHTML = "&ndash;"
    document.getElementById("p1").style.bottom ="220px"
    document.getElementById("p2").style.bottom = "220px"
    document.getElementById("p1").style.right = "98px"
    document.getElementById("p2").style.right = "26px"
    document.getElementById("p1").style.fontFamily = "CenturyGothicPro-Bold"
    document.getElementById("p2").style.fontFamily = "CenturyGothicPro-Bold"
    document.getElementById("p1").style.fontSize = 20
    document.getElementById("p2").style.fontSize = 20
    document.getElementById("nodeColorRemover").style.display = "block"
    }
  }
  }

  nodeColorLegend("Show");


  function restOfLegends(){

  if(nodeSizes.length>0 && nodeSizes.length>0){
    document.getElementById("s1").innerHTML = Number(nodeSizeRange[0]).toFixed(2)
    document.getElementById("s2").innerHTML = Number(nodeSizeRange[1]).toFixed(2)
    document.getElementById("s1").style.bottom = "145px"
    document.getElementById("s2").style.bottom = "145px"
    document.getElementById("s1").style.right = nodeSizeRange[0]<0 ? "80px":"85px"
    document.getElementById("s2").style.right = nodeSizeRange[1]<0 ? "10px":"15px"
    document.getElementById("s1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("s2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("s1").style.fontSize = 15
    document.getElementById("s2").style.fontSize = 15
    document.getElementById("nodeSizeRemover").style.display = "none"
  }
  else{
    if(animationActive){
    document.getElementById("s1").innerHTML = "&ndash;"
    document.getElementById("s2").innerHTML = "&ndash;"
    document.getElementById("s1").style.bottom = "140px"
    document.getElementById("s2").style.bottom = "140px"
    document.getElementById("s1").style.right = "26px"
    document.getElementById("s2").style.right = "98px"
    document.getElementById("s1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("s2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("s1").style.fontSize = 20
    document.getElementById("s2").style.fontSize = 20
    document.getElementById("nodeSizeRemover").style.display = "block"
  }
  }

  if(edgeColors.length>0 && edgeColors.length>0){
    document.getElementById("c1").innerHTML = Number(edgeColorRange[0]).toFixed(2)
    document.getElementById("c2").innerHTML = Number(edgeColorRange[1]).toFixed(2)
    document.getElementById("c1").style.bottom = "75px"
    document.getElementById("c2").style.bottom = "75px"
    document.getElementById("c1").style.right = nodeSizeRange[0]<0 ? "80px":"85px"
    document.getElementById("c2").style.right = nodeSizeRange[1]<0 ? "10px":"15px"
    document.getElementById("c1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("c2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("c1").style.fontSize = 15
    document.getElementById("c2").style.fontSize = 15
    document.getElementById("edgeColorRemover").style.display = "none"
  }
  else{
    if(animationActive){
    document.getElementById("c1").innerHTML = "&ndash;"
    document.getElementById("c2").innerHTML = "&ndash;"
    document.getElementById("c1").style.bottom = "70px"
    document.getElementById("c2").style.bottom = "70px"
    document.getElementById("c1").style.right = "26px"
    document.getElementById("c2").style.right = "98px"
    document.getElementById("c1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("c2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("c1").style.fontSize = 20
    document.getElementById("c2").style.fontSize = 20
    document.getElementById("edgeColorRemover").style.display = "block"
  }
  }

  if(edgeWeights.length>0 && edgeWeights.length>0){
    document.getElementById("w1").innerHTML = Number(edgeWeightRange[0]).toFixed(2)
    document.getElementById("w2").innerHTML = Number(edgeWeightRange[1]).toFixed(2)
    document.getElementById("w1").style.bottom = "-5px"
    document.getElementById("w2").style.bottom = "-5px"
    document.getElementById("w1").style.right = edgeWeightRange[0]<0 ? "80px":"85px"
    document.getElementById("w2").style.right = edgeWeightRange[1]<0 ? "10px":"15px"
    document.getElementById("w1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("w2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("w1").style.fontSize = 15
    document.getElementById("w2").style.fontSize = 15
    document.getElementById("edgeWeightRemover").style.display = "none"
  }
  else{

    if(animationActive){
    document.getElementById("w1").innerHTML = "&ndash;"
    document.getElementById("w2").innerHTML = "&ndash;"
    document.getElementById("w1").style.bottom = "-12x"
    document.getElementById("w2").style.bottom = "-12px"
    document.getElementById("w1").style.right = "26px"
    document.getElementById("w2").style.right = "98px"
    document.getElementById("w1").style.fontFamily = "CenturyGothicPro"
    document.getElementById("w2").style.fontFamily = "CenturyGothicPro"
    document.getElementById("w1").style.fontSize = 20
    document.getElementById("w2").style.fontSize = 20
    document.getElementById("edgeWeightRemover").style.display = "block"
  }
  }

  }

  restOfLegends()

  // cross-linking the node objects
  finalDataObj.links.forEach(link => {
    const a = (finalDataObj.nodes.filter(x => x.id === link.source))[0]
    const b = (finalDataObj.nodes.filter(x => x.id === link.target))[0]
    !a.neighbors && (a.neighbors = []);
    !b.neighbors && (b.neighbors = []);
    a.neighbors.push(b);
    b.neighbors.push(a);

    !a.links && (a.links = []);
    !b.links && (b.links = []);
    a.links.push(link);
    b.links.push(link);
  });


  /////////////////////////////////////////
  ////////// GUI CONTROLS ////////////////
  ////////////////////////////////////////
  const fnames = {};
   for (const key of file_names) {
    fnames[key] = key;
   }

   const PARAMS = {
    Network: file_names[index],
    PosL2FC : 0,
    NegL2FC : 0,
    Background : "#ffffff",
    Phosphorylation: "Show",
    Labels: "Off"
  };

  const phosOpt = ["Hide", "Show"];
  const labelOpt = ["On", "Off"];

  const pane = new Tweakpane.Pane({
    container: document.getElementById('guiplace'),
  });

  pane.registerPlugin(TweakpaneEssentialsPlugin);

  const tab = pane.addTab({
    pages: [
      {title: 'Controls'},
      {title: 'Animate & Record'}
    ],
  });

    tab.pages[0].addInput(PARAMS, 'Network', {options: fnames, label: 'Network'}).on('change', (ev) => {
    changeState();
    });
    tab.pages[0].addInput(PARAMS, 'PosL2FC', {min: 0, max: nodeColorThreshold, label: 'Pos-Log2FC'}).on('change', (ev) => {
    updateHighlight();
    });
    tab.pages[0].addInput(PARAMS, 'NegL2FC', {min: -nodeColorThreshold, max: 0, label: 'Neg-Log2FC'}).on('change', (ev) => {
    updateHighlight();
    });
    tab.pages[0].addInput(PARAMS, 'Background').on('change', (ev) => {
    updateBackground();
    });

    tab.pages[0].addInput(PARAMS, 'Phosphorylation', {
    view: 'radiogrid',
    groupName: 'Phosphorylation',
    size: [2, 1],
    cells: (x, y) => ({
      title: phosOpt[y * 3 + x],
      value: phosOpt[y * 3 + x],
    }),
    label: 'Partitions',
  }).on('change', (ev) => {
    nodeColorLegend(PARAMS.Phosphorylation);
    Graph.nodeThreeObject(Graph.nodeThreeObject())
  });

  tab.pages[0].addInput(PARAMS, 'Labels', {
    view: 'radiogrid',
    groupName: 'Labels',
    size: [2, 1],
    cells: (x, y) => ({
      title: labelOpt[y * 3 + x],
      value: labelOpt[y * 3 + x],
    }),
    label: 'Labels',
  }).on('change', (ev) => {
    Graph.nodeThreeObject(Graph.nodeThreeObject())
  });

  tab.pages[0].addButton({title: 'Enter/Exit Fullscreen'}).on('click',()=>{
    fullscreen();
  });

  tab.pages[0].addButton({title: 'Take a screenshot'}).on('click',()=>{
    snapshot();
  });
  tab.pages[0].addButton({title: 'Reset'}).on('click',()=>{
    queryReset();
  });

  tab.pages[0].addSeparator();
  tab.pages[0].addSeparator();

  tab.pages[0].addButton({title: 'Switch to 2D'}).on('click',()=>{
    window.location.href = 'covid-2d.html'
  });

  const f1 = tab.pages[1].addFolder({
    title: 'Animation',
  });

  const startAnimation = f1.addButton({title: 'Start Animation ▶', disabled: false})

  // const pauseAnimation = f1.addButton({title: 'Stop Animation ❚❚', disabled: true})

  const stopAnimation =f1.addButton({title: 'Stop Animation ❚❚',  disabled: true})

  const fileMonitor = f1.addMonitor(PARAMS, 'Network', {
    multiline: false,
    lineCount: 1,
  });


  startAnimation.on('click', () => {
    if(animate()){
      stopAnimation.disabled === true ? stopAnimation.disabled = false : true
    startAnimation.disabled === true ? startAnimation.disabled = false : startAnimation.disabled = true
    }
  });

  stopAnimation.on('click', () => {
    if(animationActive){
    startAnimation.disabled === true ? startAnimation.disabled = false: true
    stopAnimation.disabled = !stopAnimation.disabled;
    clearInterval(animationInterval)
    animationIndex = -1
    PARAMS.Network = file_names[sessionStorage.getItem("covididx")]
    let newthresholds = thresholdDecider(finalDataObj)
    nodeSizes = newthresholds["nodeSizes"]
    nodeColors = newthresholds["nodeColors"]
    nodeSizeRange = newthresholds["nodeSizeRange"]
    nodeColorRange = newthresholds["nodeColorRange"]
    nodeColorThreshold = newthresholds["nodeColorThreshold"]
    edgeWeights = newthresholds["edgeWeights"]
    edgeColors = newthresholds["edgeColors"]
    edgeWeightRange = newthresholds["edgeWeightRange"]
    edgeColorRange = newthresholds["edgeColorRange"]
    restOfLegends();
    animationActive = false
    resetRows();
    if(clickedNode!=null){
      let animationFinalClicked = finalDataObj["nodes"].find(x => x.id === clickedNode);
      addRows(animationFinalClicked.partitionIDs, animationFinalClicked.nodeColors, animationFinalClicked.pValues)
    }
    nodeColorLegend(PARAMS.Phosphorylation);
    Graph.nodeThreeObject(Graph.nodeThreeObject());
    Graph.linkWidth(link => (searchLinks.has(link)) ? 1 : animationActive === true ? linkWidthAnimation(link) : (edgeWeightRange[0]!= undefined && link.edgeWeight != undefined) ? normalized(link.edgeWeight, edgeWeightRange, [0,1])+.5 : .8) // subject to change
  }
  });


  tab.pages[1].addSeparator();
  tab.pages[1].addSeparator();

  const f2 = tab.pages[1].addFolder({
    title: 'Screen Record',
  });

  const startRecord = f2.addButton({title: 'Start Recording ▶',disabled: false})

  const stopRecord =f2.addButton({title: 'Stop Recording ❚❚',  disabled: true})

  f2.addSeparator();

  const downloadRecord = f2.addButton({title: 'Download Recording ↴',  disabled: true})

  startRecord.on('click', () => {
    stopRecord.disabled = !stopRecord.disabled;
    startRecord.disabled = !startRecord.disabled;

    startRecording()

    if(!downloadRecord.disabled){
      downloadRecord.disabled = !downloadRecord.disabled;
    }

  });

  stopRecord.on('click', () => {
    stopRecord.disabled = !stopRecord.disabled;
    startRecord.disabled = !startRecord.disabled;
    stopScreen()
    downloadRecord.disabled = !downloadRecord.disabled;
  });

  downloadRecord.on('click', () => {
    downloadRecord.disabled = !downloadRecord.disabled;
    downloadVideo()
  });


  /////////////////////////////////////////////////
  //////////////// GRAPH CREATION ////////////////
  /////////////////////////////////////////////////
  const regex = new RegExp('[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}')
  var elem = document.getElementById('3d-graph');
  var Graph = ForceGraph3D({rendererConfig:{preserveDrawingBuffer : true}})
    (elem)
    .backgroundColor("#ffffff")
    .graphData(finalDataObj)
    .linkCurvature('curvature')
    .nodeThreeObject(node => animationActive === false ? CreateNode(node): createNodeAnimation(node))
    .onNodeClick(node => {
      if(doubleclick){
          clickedNode = node.id
          resetRows();
          searchNodes.clear();
          searchLinks.clear();
            // Aim at node from outside it
            const distance = 100;
            const distRatio = 1 + distance/Math.hypot(node.x, node.y, node.z);

            const newPos = node.x || node.y || node.z
              ? { x: node.x * distRatio, y: node.y * distRatio, z: node.z * distRatio }
              : { x: 0, y: 0, z: distance }; // special case if node is in (0,0,0)

            Graph.cameraPosition(
              newPos, // new position
              node, // lookAt ({ x, y, z })
              3000  // ms transition duration
            )

            if (node) {
              searchNodes.add(node);
              node.neighbors.forEach(neighbor => searchNodes.add(neighbor));
              node.links.forEach(link => searchLinks.add(link));
              if(!animationActive){addRows(node.partitionIDs, node.nodeColors, node.pValues)}

              document.getElementById("nodehref").innerHTML = node.id

              if(regex.test((node.id).toUpperCase())){
                document.getElementById("nodehref").href = "http://www.phosphosite.org/uniprotAccAction?id="+(node.id).toUpperCase()
              }
              else if (hgnc_dict[(node.id).toUpperCase()] === undefined){
                document.getElementById("nodehref").href = "https://www.phosphosite.org/simpleSearchSubmitAction.action?searchStr="+node.id
              }
              else{
                document.getElementById("nodehref").href = "http://www.phosphosite.org/uniprotAccAction?id="+hgnc_dict[(node.id).toUpperCase()]
              }

              document.getElementById("typetext").innerHTML = node.type === 1 ? "Kinase" : "Substrate"

              if(node.type === 1 && node.kinaseActivity != undefined){
                document.getElementById("activityText").style.display = "inline"
                document.getElementById("activityNum").style.display = "inline"
                document.getElementById("activityNum").innerHTML = parseFloat(node.kinaseActivity).toFixed(3)
              }
              else{
                document.getElementById("activityText").style.display = "none"
                document.getElementById("activityNum").style.display = "none"
              }


            }
            updateHighlight();
            nodeColorLegend("Show");
            document.getElementById("infoBox").style.display =  "block";
          }})

    .onNodeDragEnd(node => {
      node.fx = node.x;
      node.fy = node.y;
      node.fz = node.z; })
    .onBackgroundClick(undefined=>{if(doubleclick){queryReset()}})
    .linkWidth(link => (searchLinks.has(link)) ? 1 : animationActive === true ? linkWidthAnimation(link) : (edgeWeightRange[0]!= undefined && link.edgeWeight != undefined) ? normalized(link.edgeWeight, edgeWeightRange, [0,1])+.5 : .8) // subject to change
    .linkDirectionalArrowLength(5)
    .linkDirectionalArrowRelPos(0.5)
    .linkColor(link => (searchLinks.has(link)) ? linkHighlightColoring(link) : animationActive === true ? linkColorAnimation(link) : (link.edgeColor === undefined) ? "#cccccc" : linkColoring(link.edgeColor, '2c8d5c', '97b8a0', 'd7d6d2', 'bc9bef', '743ed4'))
    .linkDirectionalParticleWidth(1.5)
    .linkOpacity(0.6)
    .linkDirectionalParticles(link => (searchLinks.has(link)) ? 4 : 0)

    // Graph.d3Force('link')
    // .distance(35)

    Graph.d3Force('charge')
    .theta(0.5)
    .strength(-200)


  elementResizeDetectorMaker().listenTo(
      document.getElementById('3d-graph'),
      el => {
        Graph.width(el.offsetWidth)
        Graph.height(el.offsetHeight)
      }
    );

  /////////////////////////////////////////////////
  ////////////// UPDATE FUNCTIONS /////////////////
  /////////////////////////////////////////////////

    function updateHighlight() {
        // trigger update of highlighted objects in scene
        Graph
          .nodeThreeObject(Graph.nodeThreeObject())
          //.linkWidth(Graph.linkWidth())
          .linkDirectionalParticles(Graph.linkDirectionalParticles());
      }

      function updateBackground() {
        Graph
          .backgroundColor(PARAMS.Background)
      }


      function updateSearch() {
        resetRows();
        let x = document.getElementById("nodequery");
        if(x.value === ""){
          searchNodes.clear();
          searchLinks.clear();
          let nodenum = Graph.graphData().nodes.length
          Graph.cameraPosition({x:0,y:0,z:Math.cbrt(nodenum) * CAMERA_DISTANCE2NODES_FACTOR},{x:0,y:0,z:0},2000)
          updateHighlight();
          document.getElementById("infoBox").style.display =  "none";
          clickedNode = null
        }

        else{
          let currentData = Graph.graphData()
          let thisNode = currentData["nodes"].filter(ix => ix.id === x.value)[0]
          const distance = 100;
            const distRatio = 1 + distance/Math.hypot(thisNode.x, thisNode.y, thisNode.z);
            Graph
            .cameraPosition(
                { x: thisNode.x * distRatio, y: thisNode.y * distRatio, z: thisNode.z * distRatio }, // new position
                thisNode, // lookAt ({ x, y, z })
                2000  // ms transition duration
              )
            searchNodes.clear();
            searchLinks.clear();
            if (thisNode) {
              clickedNode = thisNode.id
              searchNodes.add(thisNode);
              thisNode.neighbors.forEach(neighbor => searchNodes.add(neighbor));
              thisNode.links.forEach(link => searchLinks.add(link));
              if(!animationActive){addRows(thisNode.partitionIDs, thisNode.nodeColors, thisNode.pValues)}
              // addRows(thisNode.partitionIDs, thisNode.nodeColors, thisNode.pValues)
              document.getElementById("nodehref").innerHTML = thisNode.id

              if(regex.test((thisNode.id).toUpperCase())){
                document.getElementById("nodehref").href = "http://www.phosphosite.org/uniprotAccAction?id="+(thisNode.id).toUpperCase()
              }
              else if (hgnc_dict[(thisNode.id).toUpperCase()] === undefined){
                document.getElementById("nodehref").href = "https://www.phosphosite.org/simpleSearchSubmitAction.action?searchStr="+thisNode.id
              }
              else{
                document.getElementById("nodehref").href = "http://www.phosphosite.org/uniprotAccAction?id="+hgnc_dict[(thisNode.id).toUpperCase()]
              }

              document.getElementById("typetext").innerHTML = thisNode.type === 1 ? "Kinase" : "Substrate"

              if(thisNode.type === 1 && thisNode.kinaseActivity != undefined){
                document.getElementById("activityText").style.display = "inline"
                document.getElementById("activityNum").style.display = "inline"
                document.getElementById("activityNum").innerHTML = parseFloat(thisNode.kinaseActivity).toFixed(3)
              }
              else{
                document.getElementById("activityText").style.display = "none"
                document.getElementById("activityNum").style.display = "none"
              }

            }
            updateHighlight();
            nodeColorLegend("Show");
            document.getElementById("infoBox").style.display =  "block";
        }

    }

  /////////////////////////////////////////////////
  //////// NODE AND LINK CREATION FUNCTIONS ///////
  /////////////////////////////////////////////////

  function normalized(value, actual_bounds, desired_bounds) {
    return (desired_bounds[0] + (value - actual_bounds[0]) * (desired_bounds[1] - desired_bounds[0]) / (actual_bounds[1] - actual_bounds[0]))
  }

  function nodeColoring (l2fc_value) {
    if(l2fc_value === "kinase"){
      return "0xf5aa3b"
    }

      if (nodeColorRange[0] != undefined && nodeColorRange[1] != undefined){

      let threshold_max = PARAMS.PosL2FC
      let threshold_min = PARAMS.NegL2FC
      let rainbow = new Rainbow();
      nodeColorThreshold > 3 ? rainbow.setNumberRange(-3, 3) : rainbow.setNumberRange(-nodeColorThreshold, nodeColorThreshold)

      rainbow.setSpectrum('2600e6', '2A00FF', '5533FF', '7F66FF', 'AA99FF', 'D4CCFF', 'cccccc', 'FFCCDD', 'FF99BB', 'FF6699', 'FF3377', 'FF0055', 'CC0044');

      if ((l2fc_value >= threshold_min && l2fc_value <= threshold_max) || l2fc_value === "null") {
        return "0xcccccc"
      }
      else{
        let hexColour = rainbow.colourAt(l2fc_value);
        let stringColor = '0x' + hexColour
        return stringColor
      }

    }
  }

  function linkColoring (value, color1, color2, color3, color4, color5) {
    if (edgeColorRange[0] != undefined && edgeColorRange[1] != undefined){
      let rainbow = new Rainbow();
      rainbow.setNumberRange(-2, 2);
      value = normalized(value,edgeColorRange,[-2,2])
      rainbow.setSpectrum(color1, color2, color3, color4, color5)
      let hexColour = rainbow.colourAt(value);
      return parseInt(hexColour, 16)
    }
  }

  function linkHighlightColoring(link){
  var highlightVal = link.source.kinaseActivity
  if(highlightVal != undefined){
  return "#"+nodeColoring(highlightVal).substring(2)

  }
  else{
    return "#808080"
  }
}


  function CreateNode(node)
  {
    // NODE SIZE
    var node_size = node.nodeSize
    if(node_size === undefined){
      node_size = 1
    }
    else{
      node_size = normalized(node_size,nodeSizeRange,[0,1]) + 0.5
    }

    // NODE PARTITIONS
    var num_sites = (node.nodeColors).length
    if (num_sites > 1 && (PARAMS.Phosphorylation === "Show" || searchNodes.has(node))) { // partitions
      verticalPartitions = num_sites
    }
    else {
      verticalPartitions = 1
    }

    if(node.type === 1){ // if it is a kinase
      radialPartitions = 25

      if (searchNodes.has(node) || PARAMS.Labels === "On"){
      var mesh = new THREE.Mesh(
      new THREE.CylinderGeometry(node_size*0.001, node_size*8, node_size*9*verticalPartitions, radialPartitions, verticalPartitions),
      new THREE.MeshLambertMaterial({
        transparent: false,
        depthWrite: false,
        opacity: 1,
        wireframe: false,
        emissive: "#181818",
        vertexColors: THREE.FaceColors,
      }));

      }
      else{
      var mesh = new THREE.Mesh(