What's Changed
- Modernize, modularize by @jjtimmons in #5
Breaking
--igem,--addgene, and--dnasuflags are removed- embedded primer3 and blast binaries are removed (all of
/vendor) - removed all attempts/references to supporting Windows from the docs. I'm sure it still works fine, but it's easier to pretend everything is Unix
Added
repp add dbto add FASTA file sequence databases to persistent storage.repponly uses FASTA dbs that are added via this cmd--dbsflag behavior. Egrepp make seq --dbs igem,addgene,freezerto use a set of dbs during runs. Default: use all dbs- A Docker-based CLI and example for running
reppas an image. Benefit: pre-installed blast/primer3 binaries, no installing Go
Changed
- JSON feature/enzyme config files, embedded with
reppbinary until first run then written to~/.repp - Updated go version
- Beginning of some semblance of logging (incredible amount to be desired, still)
Full Changelog: v0.1.0...v1.0.0