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tbaudiertbaudier
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Update Github CI
Remove python 3.9 EOL Add python 3.13 Remove macos CI for PR to limit build time Add Windows ARM for tag version
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‎.github/workflows/ci_macos.sh‎

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#!/bin/bash
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set -e
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brew install [email protected] || true
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brew link --overwrite [email protected]
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#brew update
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#rm -rf /usr/local/bin/python3.1*-config /usr/local/bin/2to3-3.1* /usr/local/bin/idle3.1* /usr/local/bin/pydoc3.1* /usr/local/bin/python3.1*
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#rm -rf /usr/local/bin/python3-config /usr/local/bin/2to3 /usr/local/bin/idle3 /usr/local/bin/pydoc3 /usr/local/bin/python3
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brew install --force --verbose --overwrite \
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ccache \
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fftw \
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libomp \
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xquartz \
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xerces-c \
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wget || true
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brew uninstall --ignore-dependencies libxext
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brew uninstall --ignore-dependencies libx11
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export LDFLAGS="-L/usr/local/opt/llvm/lib"
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export CPPFLAGS="-I/usr/local/opt/llvm/include -fopenmp"
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conda info
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conda list
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which python
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python --version
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export PATH="/usr/local/miniconda/envs/opengate_core/bin/:$PATH"
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pip install wget colored
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pip install wheel delocate
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if [[ ${{ matrix.os }} == "macos-15-intel" ]]; then
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conda install conda-forge::qt6-main conda-forge::qt6-3d
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else
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brew install qt
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fi
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mkdir -p $HOME/software
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if [ "${{ steps.cache_opengate_core_dependencies.outputs.cache-hit }}" != 'true' ]; then
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cd $HOME/software
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mkdir geant4
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cd geant4
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mkdir src bin data
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git clone --branch $GEANT4_VERSION https://github.com/Geant4/geant4.git --depth 1 src
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cd bin
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cmake -DCMAKE_CXX_FLAGS=-std=c++17 \
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-DGEANT4_INSTALL_DATA=OFF \
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-DGEANT4_INSTALL_DATADIR=$HOME/software/geant4/data \
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-DGEANT4_USE_QT=ON \
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-DGEANT4_USE_OPENGL_X11=OFF \
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-DGEANT4_USE_QT_QT6=ON \
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-DGEANT4_USE_SYSTEM_EXPAT=OFF \
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-DGEANT4_BUILD_MULTITHREADED=ON \
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-DGEANT4_USE_GDML=ON \
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../src
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make -j4
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cd $HOME/software
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mkdir itk
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cd itk
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mkdir src bin
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git clone --branch $ITK_VERSION https://github.com/InsightSoftwareConsortium/ITK.git --depth 1 src
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cd bin
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cmake -DCMAKE_CXX_FLAGS=-std=c++17 \
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-DBUILD_TESTING=OFF \
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-DITK_USE_FFTWD=ON \
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-DITK_USE_FFTWF=ON \
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-DITK_USE_SYSTEM_FFTW:BOOL=ON \
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../src
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make -j4
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fi
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cd $GITHUB_WORKSPACE
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source $HOME/software/geant4/bin/geant4make.sh
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export CMAKE_PREFIX_PATH=$HOME/software/geant4/bin:$HOME/software/itk/bin/:${CMAKE_PREFIX_PATH}
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cd core
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mkdir opengate_core/plugins
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if [[ ${{ matrix.os }} == "macos-15-intel" ]]; then
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cp -r /Users/runner/miniconda3/envs/opengate_core/lib/qt6/plugins/platforms/* opengate_core/plugins/
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cp -r /Users/runner/miniconda3/envs/opengate_core/lib/qt6/plugins/imageformats opengate_core/plugins/
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else
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cp -r /opt/homebrew/share/qt/plugins/platforms/* opengate_core/plugins/
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cp -r /opt/homebrew/share/qt/plugins/imageformats/* opengate_core/plugins/
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fi
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python3 setup.py sdist bdist_wheel
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ls dist
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if [[ ${{ matrix.os }} == "macos-15-intel" ]]; then
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export DYLD_LIBRARY_PATH=$HOME/software/geant4/bin/BuildProducts/lib:/Users/runner/miniconda3/envs/opengate_core/lib/qt6/plugins/platforms:/opt/X11/lib/:$DYLD_LIBRARY_PATH:/Users/runner/miniconda3/envs/opengate_core/lib
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else
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export DYLD_LIBRARY_PATH=$HOME/software/geant4/bin/BuildProducts/lib:/opt/homebrew/share/qt/plugins/platforms/:/opt/X11/lib/:$DYLD_LIBRARY_PATH:/opt/homebrew/lib
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python -c "import os,delocate; print(os.path.join(os.path.dirname(delocate.__file__), 'tools.py'));quit()" | xargs -I{} sed -i."" "s/first, /input.pop('i386',None); first, /g" {}
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fi
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delocate-listdeps --all dist/*.whl
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delocate-wheel -w fixed_wheels -v dist/*.whl
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rm -rf dist
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ls fixed_wheels
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delocate-listdeps --all fixed_wheels/*.whl
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mv fixed_wheels dist
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cd dist
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if [[ ${{ matrix.os }} == "macos-15-intel" ]]; then
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find . -name '*whl' -exec bash -c ' mv $0 ${0/macosx_15_0/macosx_10_9}' {} \;
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fi
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cd ../..
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mv core/dist .

‎.github/workflows/ci_ubuntu.sh‎

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#!/bin/bash
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set -e
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if [ ${{ matrix.python-version }} == "3.10" ]; then
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export PYTHONFOLDER="cp310-cp310"
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elif [ ${{ matrix.python-version }} == "3.11" ]; then
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export PYTHONFOLDER="cp311-cp311"
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elif [ ${{ matrix.python-version }} == "3.12" ]; then
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export PYTHONFOLDER="cp312-cp312"
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elif [ ${{ matrix.python-version }} == "3.13" ]; then
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export PYTHONFOLDER="cp313-cp313"
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fi
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mkdir -p $HOME/software
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if [ ${{ matrix.os }} == "ubuntu-24.04-arm" ]; then
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export ARMDOCKER="_arm64"
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fi
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docker run --rm -e "PYTHONFOLDER=${PYTHONFOLDER}" -v $GITHUB_WORKSPACE:/home tbaudier/opengate_core:${{ env.GEANT4_VERSION }}$ARMDOCKER /home/.github/workflows/createWheelLinux.sh
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ls wheelhouse
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rm -rf dist
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mv wheelhouse dist
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sudo chown -R runner:docker dist

‎.github/workflows/ci_windows.sh‎

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#!/bin/bash
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set -e
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conda info
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conda install cmake
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cmake --version
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conda list
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which python
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python --version
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export PATH="/usr/local/miniconda/envs/opengate_core/bin/:$PATH"
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pip install wheel wget colored
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pip install cibuildwheel==2.21.1
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which pip
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mkdir -p $HOME/software
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if [ "${{ steps.cache_opengate_core_dependencies.outputs.cache-hit }}" != 'true' ]; then
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cd $HOME/software
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mkdir geant4
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cd geant4
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mkdir src bin data
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git clone --branch $GEANT4_VERSION https://github.com/Geant4/geant4.git --depth 1 src
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cd bin
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cmake -DGEANT4_INSTALL_DATA=ON \
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-DGEANT4_INSTALL_DATADIR=$HOME/software/geant4/data \
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-DGEANT4_BUILD_MULTITHREADED=ON \
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../src
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cmake --build . --config Release
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cd $HOME/software
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mkdir itk
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cd itk
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mkdir src bin
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git clone --branch $ITK_VERSION https://github.com/InsightSoftwareConsortium/ITK.git --depth 1 src
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cd bin
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cmake -DCMAKE_CXX_FLAGS=-std=c++17 \
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-DBUILD_TESTING=OFF \
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../src
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cmake --build . --config Release
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fi
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cd $GITHUB_WORKSPACE
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source $HOME/software/geant4/bin/geant4make.sh
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export CMAKE_PREFIX_PATH=$HOME/software/geant4/bin:$HOME/software/itk/bin/:${CMAKE_PREFIX_PATH}
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cd core
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if [[ ${{ matrix.python-version }} == "3.10" ]]; then
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export CIBW_BUILD="cp310-win_amd64"
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elif [[ ${{ matrix.python-version }} == "3.11" ]]; then
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export CIBW_BUILD="cp311-win_amd64"
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elif [[ ${{ matrix.python-version }} == "3.12" ]]; then
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export CIBW_BUILD="cp312-win_amd64"
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elif [[ ${{ matrix.python-version }} == "3.13" ]]; then
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export CIBW_BUILD="cp313-win_amd64"
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fi
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find $HOME/software/geant4/bin/ -iname "*.dll"
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ls $HOME/software/geant4/bin/BuildProducts/Release/bin
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ls $HOME/software/geant4/bin/BuildProducts/Release/lib/
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export CIBW_BEFORE_BUILD="python -m pip install colored"
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python -m cibuildwheel --output-dir dist
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cd ..
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mkdir core/dist2
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pip install pefile machomachomangler
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ls core/dist
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python $GITHUB_WORKSPACE\\.github\\workflows\\delocateWindows.py core\\dist -w core\\dist2 -d C:\\Users\\runneradmin\\software\\geant4\\bin\\BuildProducts\\Release\\bin
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mv core/dist2 dist

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