Hey, first of all, thanks for your project, we are using extensively and it's super useful to us.
We have lately faced a strange problem when trying to specify a specific environment file for the tests. It looks like those environment variables will only be picked if you set the fork in tests to true.
As it's a bit difficult to explain, I've created a sample project that illustrates the problem we are having https://github.com/albertpastrana/sbtenv-fork-test
Hope that helps