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Add 30 test files covering ~60 functions, coverage 45% -> ~60% #13

Add 30 test files covering ~60 functions, coverage 45% -> ~60%

Add 30 test files covering ~60 functions, coverage 45% -> ~60% #13

Triggered via push March 15, 2026 04:46
Status Failure
Total duration 24m 21s
Artifacts 3

rworkflows.yml

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AxiosError: Request failed with status code 403
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[Workflow Telemetry] AxiosError
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Process completed with exit code 1.
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cannot subset by character when names are NULL
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R CMD check found ERRORs
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
Process completed with exit code 1.
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[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1773550009980,"y":0},{"x":1773550014972,"y":303},{"x":1773550019970,"y":0},{"x":1773550024971,"y":0},{"x":1773550029966,"y":0},{"x":1773550034967,"y":56},{"x":1773550039970,"y":13},{"x":1773550044967,"y":0},{"x":1773550049967,"y":0},{"x":1773550054967,"y":0},{"x":1773550059968,"y":0},{"x":1773550064967,"y":0},{"x":1773550069968,"y":0},{"x":1773550074967,"y":102},{"x":1773550079966,"y":0},{"x":1773550084968,"y":3},{"x":1773550089967,"y":21},{"x":1773550094967,"y":0},{"x":1773550099980,"y":0},{"x":1773550104967,"y":3},{"x":1773550109977,"y":0},{"x":1773550114967,"y":0},{"x":1773550119968,"y":216},{"x":1773550124966,"y":320},{"x":1773550129967,"y":305},{"x":1773550134968,"y":308},{"x":1773550139967,"y":305},{"x":1773550144968,"y":286},{"x":1773550149967,"y":268},{"x":1773550154967,"y":243},{"x":1773550159968,"y":205},{"x":1773550164967,"y":265},{"x":1773550169966,"y":266},{"x":1773550174967,"y":257},{"x":1773550179967,"y":319},{"x":1773550184968,"y":4},{"x":1773550189975,"y":0},{"x":1773550194968,"y":0},{"x":1773550199969,"y":0},{"x":1773550204967,"y":0},{"x":1773550209966,"y":73},{"x":1773550214967,"y":316},{"x":1773550219967,"y":319},{"x":1773550224968,"y":316},{"x":1773550229967,"y":333},{"x":1773550234968,"y":331},{"x":1773550239966,"y":348},{"x":1773550244968,"y":117},{"x":1773550249966,"y":0},{"x":1773550254968,"y":0},{"x":1773550259967,"y":0},{"x":1773550264967,"y":0},{"x":1773550269968,"y":0},{"x":1773550274967,"y":0},{"x":1773550279968,"y":0},{"x":1773550284967,"y":0},{"x":1773550289967,"y":0},{"x":1773550294968,"y":0},{"x":1773550299968,"y":0},{"x":1773550304967,"y":0},{"x":1773550309967,"y":0},{"x":1773550314968,"y":0},{"x":1773550319967,"y":0},{"x":1773550324967,"y":0},{"x":1773550329967,"y":0},{"x":1773550334967,"y":0},{"x":1773550339967,"y":0},{"x":1773550344966,"y":0},{"x":1773550349969,"y":0},{"x":1773550354967,"y":0},{"x":1773550359967,"y":0},{"x":1773550364967,"y":0},{"x":1773550369967,"y":0},{"x":1773550374967,"y":0},{"x":1773550379967,"y":0},{"x":1773550384967,"y":0},{"x":1773550389968,"y":0},{"x":1773550394967,"y":0},{"x":1773550399967,"y":0},{"x":1773550404967,"y":0},{"x":1773550409967,"y":0},{"x":1773550414967,"y":0},{"x":1773550419967,"y":0},{"x":1773550424967,"y":0},{"x":1773550429967,"y":0},{"x":1773550434968,"y":0},{"x":1773550439967,"y":0},{"x":1773550444965,"y":0},{"x":1773550449968,"y":0},{"x":1773550454967,"y":0},{"x":1773550459966,"y":0},{"x":1773550464969,"y":0},{"x":1773550469967,"y":0},{"x":1773550474967,"y":0},{"x":1773550479967,"y":0},{"x":1773550484967,"y":0},{"x":1773550489972,"y":10},{"x":1773550494968,"y":96},{"x":1773550499968,"y":0},{"x":1773550504967,"y":0},{"x":1773550509965,"y":0},{"x":1773550514971,"y":6},{"x":1773550519967,"y":0},{"x":1773550524967,"y":0},{"x":1773550529971,"y":0},{"x":1773550534968,"y":0},{"x":1773550539967,"y":0},{"x":1773550544967,"y":0},{"x":1773550549968,"y":0},{"x":1773550554967,"y":0},{"x":1773550559969,"y":0},{"x":1773550564967,"y":0},{"x":1773550569969,"y":0},{"x":1773550574968,"y":0},{"x":1773550579968,"y":12},{"x":1773550584967,"y":0},{"x":1773550589967,"y":0},{"x":1773550594968,"y":0},{"x":1773550599968,"y":0},{"x":1773550604967,"y":0},{"x":1773550609976,"y":0},{"x":1773550614969,"y":0},{"x":1773550619968,"y":0},{"x":1773550624967,"y":0},{"x":1773550629969,"y":0},{"x":1773550634967,"y":0},{"x":1773550639967,"y":0},{"x":1773550644967,"y":0},{"x":1773550649969,"y":0},{"x":1773550654967,"y":0},{"x":1773550659975,"y":0},{"x":1773550664967,"y":0},{"x":1773550669967,"y":0},{"x":1773550674967,"y":0},{"x":1773550679967,"y":0},{"x":1773550684967,"y":0},{"x":1773550689967,"y":0},{"x":1773550694967,"y":0},{"x":1773550699967,"y":0},{"x":1773550704967,"y":0},{"x":1773550709967,"y":0},{"x":1773550714967,"y":0},{"x":1773550719967,"y":0},{"x":1773550724971,"y":0},{"x":1773550729968,"y":0},{"x":1773550734965,"y":0},{"x":1773550739968,"y":0},{"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773550009980,"y":2942.359375},{"x":1773550014972,"y":2935.40625},{"x":1773550019970,"y":2923.375},{"x":1773550024971,"y":2875.4375},{"x":1773550029966,"y":2790.21875},{"x":1773550034967,"y":2895.515625},{"x":1773550039970,"y":2776.953125},{"x":1773550044967,"y":2758.359375},{"x":1773550049967,"y":2802.171875},{"x":1773550054967,"y":2893.234375},{"x":1773550059968,"y":2849},{"x":1773550064967,"y":2785.28125},{"x":1773550069968,"y":2865.46875},{"x":1773550074967,"y":2583.890625},{"x":1773550079966,"y":2674.53125},{"x":1773550084968,"y":2796.515625},{"x":1773550089967,"y":2809.28125},{"x":1773550094967,"y":2911.234375},{"x":1773550099980,"y":2681.96875},{"x":1773550104967,"y":1600.484375},{"x":1773550109977,"y":1749.03125},{"x":1773550114967,"y":1842.609375},{"x":1773550119968,"y":1971.4375},{"x":1773550124966,"y":2173.546875},{"x":1773550129967,"y":2288.109375},{"x":1773550134968,"y":2258.671875},{"x":1773550139967,"y":2244.6875},{"x":1773550144968,"y":2046.828125},{"x":1773550149967,"y":2208.859375},{"x":1773550154967,"y":2203.109375},{"x":1773550159968,"y":2135.5},{"x":1773550164967,"y":2191.390625},{"x":1773550169966,"y":2260.171875},{"x":1773550174967,"y":2274.359375},{"x":1773550179967,"y":2277.96875},{"x":1773550184968,"y":2245.4375},{"x":1773550189975,"y":2788.609375},{"x":1773550194968,"y":2784.265625},{"x":1773550199969,"y":1356.484375},{"x":1773550204967,"y":1696.890625},{"x":1773550209966,"y":1777.671875},{"x":1773550214967,"y":1821.359375},{"x":1773550219967,"y":1833.484375},{"x":1773550224968,"y":1841.515625},{"x":1773550229967,"y":1851.921875},{"x":1773550234968,"y":1828.875},{"x":1773550239966,"y":1945.25},{"x":1773550244968,"y":1954.875},{"x":1773550249966,"y":1956.703125},{"x":1773550254968,"y":1959.40625},{"x":1773550259967,"y":1963.140625},{"x":1773550264967,"y":1980.21875},{"x":1773550269968,"y":1981.40625},{"x":1773550274967,"y":1981.765625},{"x":1773550279968,"y":1889.4375},{"x":1773550284967,"y":1860.484375},{"x":1773550289967,"y":1586.265625},{"x":1773550294968,"y":1677.15625},{"x":1773550299968,"y":1685.875},{"x":1773550304967,"y":1756.96875},{"x":1773550309967,"y":1871.265625},{"x":1773550314968,"y":1882.84375},{"x":1773550319967,"y":1904.09375},{"x":1773550324967,"y":1960},{"x":1773550329967,"y":1959.625},{"x":1773550334967,"y":2042.015625},{"x":1773550339967,"y":2214.078125},{"x":1773550344966,"y":2061.484375},{"x":1773550349969,"y":2070.96875},{"x":1773550354967,"y":2076.15625},{"x":1773550359967,"y":2141},{"x":1773550364967,"y":2134.734375},{"x":1773550369967,"y":2158.96875},{"x":1773550374967,"y":2241.328125},{"x":1773550379967,"y":2245.71875},{"x":1773550384967,"y":2180.15625},{"x":1773550389968,"y":2181.5},{"x":1773550394967,"y":2184.328125},{"x":1773550399967,"y":2185.21875},{"x":1773550404967,"y":2208.171875},{"x":1773550409967,"y":2298.65625},{"x":1773550414967,"y":2331.859375},{"x":1773550419967,"y":2333.34375},{"x":1773550424967,"y":2337.96875},{"x":1773550429967,"y":2342.421875},{"x":1773550434968,"y":2339.859375},{"x":1773550439967,"y":2347.53125},{"x":1773550444965,"y":2342.78125},{"x":1773550449968,"y":2032.125},{"x":1773550454967,"y":2076.234375},{"x":1773550459966,"y":2098.78125},{"x":1773550464969,"y":2142.96875},{"x":1773550469967,"y":2146.765625},{"x":1773550474967,"y":2160.21875},{"x":1773550479967,"y":2164},{"x":1773550484967,"y":2085.59375},{"x":1773550489972,"y":1780.546875},{"x":1773550494968,"y":1993.265625},{"x":1773550499968,"y":2108.890625},{"x":1773550504967,"y":2258.40625},{"x":1773550509965,"y":2311.984375},{"x":1773550514971,"y":2290.25},{"x":1773550519967,"y":2560.328125},{"x":1773550524967,"y":2813.25},{"x":1773550529971,"y":2821.265625},{"x":1773550534968,"y":2280.0625},{"x":1773550539967,"y":2561.921875},{"x":1773550544967,"y":2284.421875},{"x":1773550549968,"y":2500.265625},{"x":1773550554967,"y":2690.828125},{"x":1773550559969,"y"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773550009980,"y":32.17044159597208},{"x":1773550014972,"y":37.58389261744966},{"x":1773550019970,"y":32.25806451612903},{"x":1773550024971,"y":33.57859531772575},{"x":1773550029966,"y":36.81757656458056},{"x":1773550034967,"y":41.250831669993346},{"x":1773550039970,"y":45.369127516778526},{"x":1773550044967,"y":52.80748663101604},{"x":1773550049967,"y":50.863213811420984},{"x":1773550054967,"y":56.65551839464883},{"x":1773550059968,"y":60.86666666666667},{"x":1773550064967,"y":50.368385800401875},{"x":1773550069968,"y":39.25482368596141},{"x":1773550074967,"y":55.18394648829431},{"x":1773550079966,"y":21.58176943699732},{"x":1773550084968,"y":36.29086057371581},{"x":1773550089967,"y":42.69436997319035},{"x":1773550094967,"y":30.13972055888224},{"x":1773550099980,"y":52.45126993502658},{"x":1773550104967,"y":50.22970903522205},{"x":1773550109977,"y":45.90818363273453},{"x":1773550114967,"y":54.283801874163316},{"x":1773550119968,"y":53.81552753815527},{"x":1773550124966,"y":58.40589417280643},{"x":1773550129967,"y":63.58768406961178},{"x":1773550134968,"y":60.75949367088608},{"x":1773550139967,"y":54.886211512717544},{"x":1773550144968,"y":56.666666666666664},{"x":1773550149967,"y":63.259853039412164},{"x":1773550154967,"y":53.79494007989347},{"x":1773550159968,"y":61.02598267821452},{"x":1773550164967,"y":58.299866131191436},{"x":1773550169966,"y":56.924101198402134},{"x":1773550174967,"y":53.9746158984636},{"x":1773550179967,"y":55.68181818181818},{"x":1773550184968,"y":17.220338983050848},{"x":1773550189975,"y":24.751161247511615},{"x":1773550194968,"y":18.094585332419467},{"x":1773550199969,"y":26.97768762677485},{"x":1773550204967,"y":34.356237491661105},{"x":1773550209966,"y":40.34736138944556},{"x":1773550214967,"y":50.567044696464315},{"x":1773550219967,"y":54.99334221038615},{"x":1773550224968,"y":53.435623749166105},{"x":1773550229967,"y":47.22408026755853},{"x":1773550234968,"y":56.81969394544245},{"x":1773550239966,"y":51.59574468085106},{"x":1773550244968,"y":46.54130288784419},{"x":1773550249966,"y":18.520986009327114},{"x":1773550254968,"y":15.332885003362476},{"x":1773550259967,"y":15.883520847121114},{"x":1773550264967,"y":13.896457765667575},{"x":1773550269968,"y":17.65886287625418},{"x":1773550274967,"y":14.668452779638313},{"x":1773550279968,"y":16.666666666666664},{"x":1773550284967,"y":14.670255720053834},{"x":1773550289967,"y":10.466666666666667},{"x":1773550294968,"y":36.97253851306095},{"x":1773550299968,"y":17.05685618729097},{"x":1773550304967,"y":27.29096989966555},{"x":1773550309967,"y":52.59308510638297},{"x":1773550314968,"y":61.40468227424749},{"x":1773550319967,"y":42.69662921348314},{"x":1773550324967,"y":48.65951742627346},{"x":1773550329967,"y":50.46791443850267},{"x":1773550334967,"y":58.63909272848565},{"x":1773550339967,"y":61.2558450233801},{"x":1773550344966,"y":45.69138276553106},{"x":1773550349969,"y":12.88384512683578},{"x":1773550354967,"y":34.979973297730304},{"x":1773550359967,"y":48.8356620093147},{"x":1773550364967,"y":39.019476158495635},{"x":1773550369967,"y":30.213903743315505},{"x":1773550374967,"y":11.895161290322582},{"x":1773550379967,"y":8.316566063044936},{"x":1773550384967,"y":9.316353887399465},{"x":1773550389968,"y":8.730691739422431},{"x":1773550394967,"y":8.462055070517126},{"x":1773550399967,"y":9.59731543624161},{"x":1773550404967,"y":8.016032064128256},{"x":1773550409967,"y":14.552736982643525},{"x":1773550414967,"y":10.529845741113347},{"x":1773550419967,"y":8.999328408327736},{"x":1773550424967,"y":7.248322147651007},{"x":1773550429967,"y":7.25319006044325},{"x":1773550434968,"y":6.850235057085293},{"x":1773550439967,"y":11.831550802139038},{"x":1773550444965,"y":7.873485868102288},{"x":1773550449968,"y":19.318181818181817},{"x":1773550454967,"y":9.805238415043654},{"x":1773550459966,"y":12.567204301075268},{"x":1773550464969,"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
ignoring SIGPIPE signal
macOS-latest (auto)
cannot subset by character when names are NULL
macOS-latest (auto)
R CMD check found ERRORs
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
file 'echoconda/configure' did not have execute permissions: corrected
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
dependency ‘BiocVersion’ is not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-auto-results
7.48 MB
sha256:ce2055dea761fb092bbbc2cace071559d03a225e39419cef470a7b7d16354876
Windows-biocversion-release-r-auto-results
6.88 MB
sha256:b1660ae5b8852af9039a842d0fa076bcc3599fc8f0437f447edda98e738a0381
macOS-biocversion-release-r-auto-results
7.53 MB
sha256:d1680825d700ad3aea42edfd5788324f631efe8bbe6acf666317f9eeb45300aa