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Propose a SBML schema expantion to add missing information #22

@Laouen

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@Laouen

missing information

The current SBML schema does not consider some information as the koff, kon, volume, dry weight and other information related with a model micro view.

Missing enzymes

Enzymes are not specified as separated entities from the reaction, instead they are specified as text, this is not a good aproximátion when working with the parser due to dealing with a non standarized schema for enzyme specification, a listOfEnzymes must be addded to the sbml structure.

parsing and simulation process modification

Once these changes are finished, the model parsing and simulation process can be modified from:

  1. parsing SBML getting missing information form input
  2. generate model
  3. run simulation

To the next schema

  1. translate the original SBML to the new expanded SBML schema getting the missing information from input
  2. generate model from the new expanded SBML
  3. run simulation

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