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Description
missing information
The current SBML schema does not consider some information as the koff, kon, volume, dry weight and other information related with a model micro view.
Missing enzymes
Enzymes are not specified as separated entities from the reaction, instead they are specified as text, this is not a good aproximátion when working with the parser due to dealing with a non standarized schema for enzyme specification, a listOfEnzymes must be addded to the sbml structure.
parsing and simulation process modification
Once these changes are finished, the model parsing and simulation process can be modified from:
- parsing SBML getting missing information form input
- generate model
- run simulation
To the next schema
- translate the original SBML to the new expanded SBML schema getting the missing information from input
- generate model from the new expanded SBML
- run simulation