cisTarget_error (even use the given example) #33
Description
Thank you so much for creating such a wonderful tool!
When I try to use this package, errors like this always occurred:
Error in data.frame(row.names = motifNames, rankings[, geneSet]) :
duplicate row.names: 18773, 20079, 19518, 17774, 18424, 17396, 18468, 18723, 18908, 17670, 17558, 19155, 16483, 16590, 19167, 17706, 16893, 15166, 17819, 18813, 16943, 17952, 17148, 15613, 16527, 18954, 19290, 18457, 16980, 20237, 16406, 19008, 17993, 18578, 18660, 17524, 17966, 16920, 16641, 16758, 18787, 17874, 18027, 18786, 17896, 18540, 19543, 18043, 19171, 19531, 19273, 14680, 17681, 18733, 18570, 17160, 18186, 18565, 17688, 2045, 18250, 18542, 16879, 17118, 17052, 19132, 17518, 17488, 16684, 18125, 16914, 15706, 18760, 15928, 17342, 12070, 18665, 18763, 17083, 17420, 16495, 18505, 13713, 15684, 16784, 17723, 15841, 18263, 18743, 17731, 19016, 18855, 17836, 14242, 17716, 18200, 17280, 18582, 17560, 16530, 18153, 18331, 17816, 19788, 19718, 18670, 17784, 20163, 17582, 14963, 19024, 16040, 18037, 16847, 15980, 17146, 17880, 16421, 16107, 18105, 15910, 19431, 19353, 16304, 18812, 19474, 15310, 17841, 19229, 16787, 18526, 17289, 18592, 17946, 16778, 17135, 20108, 18637, 17979
I try different motifRankings and geneList (as the manual teaches), but the error still exists, even use the given example and code in the website (https://www.bioconductor.org/packages/release/bioc/vignettes/RcisTarget/inst/doc/RcisTarget_MainTutorial.html#Running_RcisTarget), the error happens. My geneList is short.
I don't know why this happened. Look forward to your replies. Thank you very much.