start with this project, ideas

[eparejatobes]

@bio4j/bio-people @pablopareja is starting to work on this, and it'd be good to have some ideas as a starting point. I think that we should start with something based on one of the basic existing D3 layouts; the par-coords plugin is also stable and easy to use.

[pablopareja]

Hello hello!
So could you please tell which one of the ideas you mentioned in the last e-mail should I start with?
@eparejatobes (is it possible that neither @epareja nor @rtobes can access this repository right now?) ❓

[laughedelic]

Sorry to disturb, but I just wanted to tell that there is no such team: @bio4j/bio-people.

[eparejatobes]

there is!

[eparejatobes]

@pablopareja maybe they're not watching, so I don't know what happens when you mention them through a team that does not have this repo added. I added them anyway. Let's try again @bio4j/bio-people hola hola

[laughedelic]

Ah, ok. I guess I just came from the wrong level of conspiracy.

[marina-manrique]

@rtobes said something like this. For a given set of GO terms and Taxonomy nodes show the proteins linked to their GO term and their Taxon node. I don't know if I'm clear

For this I suggest something simple to start with, something based on this https://github.com/mbostock/d3/wiki/Force-Layout

where the protein nodes have a color, the taxon nodes another color and the go terms another one.

@rtobes WDYT? I think it's a good example to start with

[eparejatobes]

but @laughedelic you can see it now? I mean, it works or something"

[laughedelic]

No, I get 404 when I click on it. And it doesn't get highlighted when I use it. But I guess, it works when you use it.

[pablopareja]

@marina-manrique OK, and any extra details about whether you want to include some kind of simple form holding the data of clicked items or something like that?

[marina-manrique]

Maybe for this time you could display when roll-over the Taxon Name, GO Term name or protein name (depending on the kind of node)

and it'd also be good to highlight the nodes connected directly with a given node and set the others in light grey,

[pablopareja]

The latter also on roll-over?

[marina-manrique]

👍

[rtobes]

I am here now.
on roll over highlighting the connected nodes and on click I would like to have the names of all the nodes connected to the clicked node.

[eparejatobes]

http://cs.brown.edu/people/jcmace/d3/graph.html?id=small.json