Fix CI issues in the nightly run

https://github.com/bytecodealliance/wasm-micro-runtime/actions/workflows/nightly_run.yml


```
[Invalid workflow file: .github/workflows/nightly_run.yml#L1](https://github.com/bytecodealliance/wasm-micro-runtime/actions/runs/20320826739/workflow)
(Line: 398, Col: 9): 'include' is already defined
```