Update citation

Author: arcresu

DESCRIPTION

@@ -18,7 +18,7 @@ Description: A collection of utilities and 'ggplot2' extensions to assist with
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Suggests: 
     knitr,
     rmarkdown,

NEWS.md

@@ -1,5 +1,7 @@
 # phylepic (development version)
 
+* Update citation to published manuscript.
+
 # phylepic 0.2.1
 
 * Unreleased.

README.Rmd

@@ -63,5 +63,5 @@ Refer to [the package vignette](https://cidm-ph.github.io/phylepic/articles/phyl
 See `citation("phylepic")`.
 
 Suster CJE, Watt AE, Wang Q, Chen SC, Kok J, Sintchenko V (2024).
-“Combined visualization of genomic and epidemiological data for outbreaks [Preprint].”
-_medRxiv_. [doi:10.1101/2024.04.02.24305229](https://doi.org/10.1101/2024.04.02.24305229),
+“Combined visualization of genomic and epidemiological data for outbreaks.”
+_Epidemiology & Infection_ 152: e110. [doi:10.1017/S0950268824001092](https://doi.org/10.1017/S0950268824001092),

README.md

@@ -55,5 +55,5 @@ See `citation("phylepic")`.
 
 Suster CJE, Watt AE, Wang Q, Chen SC, Kok J, Sintchenko V (2024).
 “Combined visualization of genomic and epidemiological data for
-outbreaks \[Preprint\].” *medRxiv*.
-[doi:10.1101/2024.04.02.24305229](https://doi.org/10.1101/2024.04.02.24305229),
+outbreaks.” *Epidemiology & Infection* 152: e110.
+[doi:10.1017/S0950268824001092](https://doi.org/10.1017/S0950268824001092),

inst/CITATION

@@ -1,9 +1,10 @@
 bibentry(
   bibtype  = "Article",
-  journal  = "medRxiv",
-  title    = "Combined visualization of genomic and epidemiological data for outbreaks [Preprint]",
+  journal  = "Epidemiology & Infection",
+  volume   = "152",
+  pages    = "e110",
+  title    = "Combined visualization of genomic and epidemiological data for outbreaks",
   author   = "Carl J. E. Suster and Anne E. Watt and Qinning Wang and Sharon C.-A. Chen and Jen Kok and Vitali Sintchenko",
   year     = "2024",
-  doi      = "10.1101/2024.04.02.24305229",
-  url      = "https://www.medrxiv.org/content/10.1101/2024.04.02.24305229v1"
+  doi      = "10.1017/S0950268824001092",
 )