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Description
Hi Camille,
I installed dammit, but I get this error when I try to install databases. How can I fix it?
Thanks
dammit databases --install --database-dir /cluster_data/home/genomic/software/conda_env/dammit/databases_dir --busco-group metazoa
dammit
a tool for easy de novo transcriptome annotation
by Camille Scott
v1.2, 2018
submodule: databases
Database Install
Info
- Database Directory: /cluster_data/home/genomic/software/conda_env/dammit/databases_dir
- Doit Database: /cluster_data/home/genomic/software/conda_env/dammit/databases_dir/databases.doit.db
Some tasks out of date!
Out-of-date tasks:
- cmpress:Rfam
- download:BUSCO-metazoa
- download:OrthoDB
- download:Pfam-A
- download:Rfam
- download:sprot
- gunzip:OrthoDB
- gunzip:Pfam-A
- gunzip:Rfam
- hmmpress:Pfam-A
- lastdb:OrthoDB
- lastdb:sprot
Installing...
Run Tasks
Traceback (most recent call last):
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/doit_cmd.py", line 294, in run
return command.parse_execute(args)
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/cmd_base.py", line 150, in parse_execute
return self.execute(params, args)
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/cmd_base.py", line 525, in execute
dodo_config = self.loader.load_doit_config()
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/cmd_base.py", line 327, in load_doit_config
raise NotImplementedError() # pragma: no cover
NotImplementedError