update dev documentation

Author: skoudoro

dev/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: c341bb1d828e1d2c6c6fd2581e1855ca
+config: 287b2656950a7c84b80ff68ec819cbbd
 tags: 645f666f9bcd5a90fca523b33c5a78b7

dev/_downloads/00578b2c2ed365881df57919e79320c5/denoise_gibbs.zip

@@ -355,7 +355,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.12.8"
+      "version": "3.10.13"
     }
   },
   "nbformat": 4,

dev/_downloads/00eb06b833895b9bbb58ae4d6dcea401/affine_registration_3d.zip

@@ -391,7 +391,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.12.8"
+      "version": "3.10.13"
     }
   },
   "nbformat": 4,

dev/_downloads/08388158f9dc9a2077ee7270faad37cf/quick_start.ipynb

@@ -85,7 +85,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.12.8"
+      "version": "3.10.13"
     }
   },
   "nbformat": 4,

dev/_downloads/08e89c569d66c995de07925eee8d317a/affine_registration_3d.ipynb

@@ -33,9 +33,9 @@
 from dipy.io.streamline import save_trk
 from dipy.reconst.shm import CsaOdfModel
 from dipy.tracking import utils
-from dipy.tracking.local_tracking import LocalTracking
 from dipy.tracking.stopping_criterion import ThresholdStoppingCriterion
 from dipy.tracking.streamline import Streamlines
+from dipy.tracking.tracker import eudx_tracking
 from dipy.viz import actor, colormap, has_fury, window
 
 ###############################################################################
@@ -154,15 +154,15 @@
 seeds = utils.seeds_from_mask(seed_mask, affine, density=[2, 2, 2])
 
 ###############################################################################
-# Finally, we can bring it all together using ``LocalTracking``, using
+# Finally, we can bring it all together using ``eudx_tracking``, using
 # the EuDX algorithm :footcite:p:`Garyfallidis2012b`. ``EuDX`` is a fast
 # algorithm that we use here to generate streamlines. This algorithm is what is
 # used here and the default option when providing the output of peaks directly
-# in LocalTracking.
+# in eudx_tracking.
 
-# Initialization of LocalTracking. The computation happens in the next step.
-streamlines_generator = LocalTracking(
-    csa_peaks, stopping_criterion, seeds, affine=affine, step_size=0.5
+# Initialization of eudx_tracking. The computation happens in the next step.
+streamlines_generator = eudx_tracking(
+    seeds, stopping_criterion, affine, step_size=0.5, pam=csa_peaks
 )
 # Generate streamlines object
 streamlines = Streamlines(streamlines_generator)

dev/_downloads/08f3c82e8199886796450b755e8d801f/combined_workflow_creation.ipynb

@@ -193,7 +193,7 @@
       "name": "python",
       "nbconvert_exporter": "python",
       "pygments_lexer": "ipython3",
-      "version": "3.12.8"
+      "version": "3.10.13"
     }
   },
   "nbformat": 4,