Update python version

Author: donishadsmith

.github/workflows/benchmark.yml

@@ -2,7 +2,7 @@ name: Benchmark
 
 on:
   push:
-    branches: [main]
+    branches: [main, development]
   pull_request:
     branches:
       - '*'
@@ -18,7 +18,7 @@ jobs:
     strategy:
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
-        python-ver: ['3.9', '3.12']
+        python-ver: ['3.9', '3.13']
 
     steps:
       - uses: actions/checkout@v5

.github/workflows/precommit.yml

@@ -2,7 +2,7 @@ name: Pre-commit
 
 on:
   push:
-    branches: [main]
+    branches: [main, development]
   pull_request:
     branches:
       - '*'

.github/workflows/testing.yaml

@@ -2,7 +2,7 @@ name: Run Tests
 
 on:
   push:
-    branches: [main]
+    branches: [main, development]
   pull_request:
     branches:
       - '*'
@@ -21,7 +21,7 @@ jobs:
     strategy:
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
-        python-ver: ['3.9', '3.10', '3.11', '3.12']
+        python-ver: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     name: Python ${{ matrix.python-ver }} check on ${{ matrix.os }}
     steps:

.gitignore

@@ -3,6 +3,7 @@ docs/api/generated/
 __pycache__/
 neurocaps.egg-info/
 dist/
+venv/
 neurocaps_demo/
 .asv/
 .DS_Store

CHANGELOG.md

@@ -15,6 +15,9 @@ noted in the changelog (e.g., new functions or parameters, changes in parameter
 improvements/enhancements. All fixes and modifications are backwards compatible.
 - *.postN* : Consists of documentation changes or metadata-related updates, such as modifications to type hints.
 
+## [0.36.0] - 2025-11-22
+- Support for Python 3.13
+
 ## [0.35.2] - 2025-08-15
 ### 🐛 Fixes
 - Fixes an error message not providing valid number of nodes when fetching parcellation approaches.

README.md

@@ -2,7 +2,7 @@
 
 [![Latest Version](https://img.shields.io/pypi/v/neurocaps.svg)](https://pypi.python.org/pypi/neurocaps/)
 [![Python Versions](https://img.shields.io/pypi/pyversions/neurocaps.svg)](https://pypi.python.org/pypi/neurocaps/)
-[![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.11642615-teal)](https://doi.org/10.5281/zenodo.16880388)
+[![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.11642615-teal)](https://doi.org/10.5281/zenodo.17679455)
 [![Test Status](https://github.com/donishadsmith/neurocaps/actions/workflows/testing.yaml/badge.svg)](https://github.com/donishadsmith/neurocaps/actions/workflows/testing.yaml)
 [![Documentation Status](https://readthedocs.org/projects/neurocaps/badge/?version=stable)](http://neurocaps.readthedocs.io/en/stable/?badge=stable)
 [![codecov](https://codecov.io/github/donishadsmith/neurocaps/branch/main/graph/badge.svg?token=WS2V7I16WF)](https://codecov.io/github/donishadsmith/neurocaps)
@@ -18,7 +18,7 @@ k-means clustering on BOLD timeseries data [^1].
 </p>
 
 ## Installation
-**Requires Python 3.9-3.12.**
+**Requires Python 3.9-3.13.**
 
 ### Standard Installation
 ```bash

docs/introduction.rst

@@ -9,7 +9,7 @@
    :alt: Python Versions
 
 .. image:: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.11642615-teal
-   :target: https://doi.org/10.5281/zenodo.16880388
+   :target: https://doi.org/10.5281/zenodo.17679455
    :alt: DOI
 
 .. image:: https://img.shields.io/badge/Source%20Code-neurocaps-purple
@@ -116,7 +116,7 @@ NeuroCAPs relies on several packages:
       "kaleido>=0.2.0, <1.0.0; platform_system != 'Windows'",
       "setuptools>=77.0.1; python_version>='3.12'",
       "typing_extensions>=4.10.0",
-      "vtk>=9.2.0, <9.4.0",
+      "vtk>=9.2.0",
       "tqdm>=4.65.0"
       ]
 

docs/user_guide/installation.rst

@@ -1,6 +1,6 @@
 Installation
 ============
-**Requires Python 3.9-3.12.**
+**Requires Python 3.9-3.13.**
 
 Standard Installation
 ---------------------

neurocaps/__init__.py

@@ -22,4 +22,4 @@
 __all__ = ["analysis", "extraction", "exceptions", "utils"]
 
 # Version in single place
-__version__ = "0.35.2"
+__version__ = "0.36.0"

pyproject.toml

@@ -12,7 +12,7 @@ license = "MIT"
 authors = [{name = "Donisha Smith", email = "[email protected]"}]
 description = "Co-activation Patterns (CAPs) Python package"
 readme = "README.md"
-requires-python = ">=3.9.0, <3.13"
+requires-python = ">=3.9.0"
 
 keywords = [
     "python",
@@ -60,8 +60,8 @@ dependencies = [
     "kaleido>=0.2.0, <1.0.0; platform_system != 'Windows'",
     "setuptools>=77.0.1; python_version>='3.12'", # Results in installation errors if not included as dependency
     "typing_extensions>=4.10.0",
-    "vtk>=9.2.0, <9.4.0", # Version >= 9.4.0 works for 3.13 but incompatible with brainspace due no  "__vtkname__" in Pointset
-    "tqdm>=4.65.0"
+    "vtk>=9.2.0",
+    "tqdm>=4.65.0",
     ]
 
 [project.optional-dependencies]