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Importing SEACells not possible - error creating env #79

@MichaelS27A

Description

@MichaelS27A

Hello,

I am running into issues with the installation and the import of SEACells.
Making the environment from the environment.yaml file seems to not work due to python=3.5
I tried replacing this with 3.10. The environment is then created but SEACells itself cannot be imported
I tried this in multiple environments, on our cluster, locally ect.
I got it running it seems like for now with this env:
name: seacells
channels:

  • conda-forge
  • bioconda
    dependencies:
  • python=3.10
  • scanpy=1.11.1
  • anndata=0.11.4
  • palantir=1.4.0
  • numpy
  • scipy
  • pandas
  • matplotlib>=3.8,<3.10 # force Matplotlib 3.8.x or 3.9.x
  • cmake
  • pip
  • pip:

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