refactored all imports, src -> gnn_aid

Author: mishadr

.github/workflows/linter.yaml

@@ -26,16 +26,19 @@ jobs:
           python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .
       - name: Set PYTHONPATH
         run: |
-          echo "PYTHONPATH=$PYTHONPATH:$(pwd)/src" >> $GITHUB_ENV
+          echo "PYTHONPATH=$PYTHONPATH:$(pwd)/gnn_aid" >> $GITHUB_ENV
 
-      - name: Run Pylint Models
-        run: pylint models_builder --fail-under=9.5
-#      - name: Run Pylint defense
-#        run: pylint defenses --fail-under=9.0
-      - name: Run Pylint attacks
-        run: pylint attacks --fail-under=9.0
       - name: Run Pylint aux
         run: pylint aux --fail-under=9.5
+      - name: Run Pylint datasets
+        run: pylint datasets --fail-under=9.75
+      - name: Run Pylint data_structures
+        run: pylint data_structures --fail-under=9.75
+      - name: Run Pylint Models
+        run: pylint models_builder --fail-under=9.5
       - name: Run Pylint explainers
         run: pylint explainers --fail-under=9.0
-
+      - name: Run Pylint attacks
+        run: pylint attacks --fail-under=9.0
+      - name: Run Pylint defenses
+        run: pylint defenses --fail-under=8.75

.gitignore

@@ -9,7 +9,6 @@
 *__pycache__*
 *.py[cod]
 *$py.class
-*PTGDataset*
 *experiments/explainers_metrics*
 
 .cache
@@ -20,6 +19,7 @@ _static
 build
 config
 pics
+pic
 results
 sphinx_docs
 *explainers_metrics*
@@ -28,7 +28,6 @@ experiments/explainers_metrics/**/*_metrics.json
 data
 datasets
 explanations
-<base.ptg_datasets.PTGDataset object*
 models
 models_exp
 results
@@ -46,8 +45,7 @@ venv_new
 
 gnn
 torch_install
-src/.vscode
-data__DatasetsTest_tmp/
+gnn_aid/.vscode
 
 # Mac OS extentions
 *.DS_Store

README.md

@@ -40,10 +40,10 @@ Suppose you are at the project root folder. Activate virtual environment
 source venv/bin/activate
 ```
 
-Go to `src` folder and add it to python dependencies
+Go to `gnn_aid` folder and add it to python dependencies
 
 ```text
-cd src
+cd gnn_aid
 export PYTHONPATH=.
 ```
 

data/example/custom/karate/metainfo

@@ -1,6 +1,6 @@
 {
  "class_name": "KnownFormatDataset",
- "import_from": "datasets.known_format_datasets",
+ "import_from": "gnn_aid.datasets.known_format_datasets",
  "count": 1,
  "name": "Zachary karate club",
  "nodes": [34],

data/example/example/metainfo

@@ -1,6 +1,6 @@
 {
  "class_name": "KnownFormatDataset",
- "import_from": "datasets.known_format_datasets",
+ "import_from": "gnn_aid.datasets.known_format_datasets",
  "name": "example",
  "count": 1,
  "directed": false,

data/example/example3/metainfo

@@ -1,6 +1,6 @@
 {
  "class_name": "KnownFormatDataset",
- "import_from": "datasets.known_format_datasets",
+ "import_from": "gnn_aid.datasets.known_format_datasets",
  "name": "example",
  "count": 3,
  "directed": false,

data/example/example3_gml/metainfo

@@ -1,6 +1,6 @@
 {
  "class_name": "KnownFormatDataset",
- "import_from": "datasets.known_format_datasets",
+ "import_from": "gnn_aid.datasets.known_format_datasets",
  "format": "gml",
  "name": "example of multiple graphs in gml format",
  "count": 3,

data/example/example8/metainfo

@@ -1,6 +1,6 @@
 {
  "class_name": "KnownFormatDataset",
- "import_from": "datasets.known_format_datasets",
+ "import_from": "gnn_aid.datasets.known_format_datasets",
  "count": 8,
  "nodes": [5, 4, 4, 8, 6, 7, 7, 9],
  "directed": true,

data/example/example_gml/metainfo

@@ -1,6 +1,6 @@
 {
  "class_name": "KnownFormatDataset",
- "import_from": "datasets.known_format_datasets",
+ "import_from": "gnn_aid.datasets.known_format_datasets",
  "name": "example_gml",
  "format": "gml",
  "count": 1,

docs/source/conf.py

@@ -8,7 +8,7 @@
 #
 import os
 import sys
-sys.path.insert(0, os.path.abspath('../../src'))
+sys.path.insert(0, os.path.abspath('../../gnn_aid'))
 sys.path.insert(0, os.path.abspath('../../'))
 sys.setrecursionlimit(1500)