Minor PR feedback #1727
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| name: Plot performance profiles for LINCOA, small | |
| on: | |
| # Trigger the workflow on push or pull request | |
| push: | |
| pull_request: # DANGEROUS! MUST be disabled for self-hosted runners! | |
| # Trigger the workflow by cron. The default time zone of GitHub Actions is UTC. | |
| # schedule: | |
| # - cron: '0 2,6,10,14,18,22 * * *' | |
| # Trigger the workflow manually | |
| workflow_dispatch: | |
| inputs: | |
| git-ref: | |
| description: Git Ref (Optional) | |
| required: false | |
| # Show the git ref in the workflow name if it is invoked manually. | |
| run-name: ${{ github.event_name == 'workflow_dispatch' && format('Manual run {0}', inputs.git-ref) || '' }} | |
| jobs: | |
| test: | |
| name: Profile PRIMA. | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| matlab: [latest] | |
| dim: [small] | |
| solver: [lincoa] | |
| competitor: [classical, archiva, norma] | |
| use_system_libgcc: [true] # Whether to use the system libgcc or the one shipped with MATLAB. | |
| with_optim_toolbox: [yes, no] | |
| ctol_indicator: [0, 1, 2] | |
| test_feasibility_problems: [true, false] | |
| steps: | |
| - name: Run `sudo apt update -y` | |
| run: sudo apt update -y # Otherwise, free-disk-space or other actions relying on `apt` may fail | |
| - name: Free disk space | |
| uses: jlumbroso/free-disk-space@main | |
| if: startsWith(matrix.os, 'ubuntu') | |
| with: | |
| # all of these default to true, but feel free to set to "false" if necessary for your workflow | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: true | |
| docker-images: true | |
| swap-storage: false # Important, or the runner may be shut down due to memory starvation. | |
| - name: Clone Repository (Latest) | |
| uses: actions/checkout@v5.0.0 | |
| if: github.event.inputs.git-ref == '' | |
| with: | |
| fetch-depth: 2 # checkout fetches only one commit by default. Set it to two for the `norma` test | |
| ssh-key: ${{ secrets.SSH_PRIVATE_KEY_ACT }} # This forces checkout to use SSH, not HTTPS | |
| submodules: recursive | |
| - name: Clone Repository (Custom Ref) | |
| uses: actions/checkout@v5.0.0 | |
| if: github.event.inputs.git-ref != '' | |
| with: | |
| fetch-depth: 2 # checkout fetches only one commit by default. Set it to two for the `norma` test | |
| ref: ${{ github.event.inputs.git-ref }} | |
| ssh-key: ${{ secrets.SSH_PRIVATE_KEY_ACT }} # This forces checkout to use SSH, not HTTPS | |
| submodules: recursive | |
| - name: Set norma to the last commit to prepare for profiling | |
| if: ${{ matrix.competitor == 'norma' }} | |
| run: git checkout HEAD^ && cd .development && bash ./archnorma && cd ../ && git checkout - | |
| - name: Miscellaneous setup | |
| run: bash .github/scripts/misc_setup | |
| - name: Clone MatCUTEst | |
| uses: actions/checkout@v5.0.0 | |
| with: | |
| ssh-key: ${{ secrets.SSH_PRIVATE_KEY_ACT }} # This forces checkout to use SSH, not HTTPS | |
| repository: matcutest/matcutest_compiled | |
| path: matcutest | |
| - name: Set up gfortran on Linux | |
| if: startsWith(matrix.os, 'ubuntu') | |
| uses: fortran-lang/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GFORTRAN_VERSION }} | |
| - name: Check gfortran version on Linux | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: which gcc && gcc --version && which gfortran && gfortran --version | |
| - name: Install epstopdf and ghostscript | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: bash .github/scripts/install_epstopdf && bash .github/scripts/install_ghostscript | |
| - name: Check MATLAB | |
| id: check_matlab | |
| run: if type 'matlab' &> /dev/null ; then echo "::set-output name=has_matlab::true" ; fi | |
| - name: Set up MATLAB with optimization toolbox | |
| if: ${{ steps.check_matlab.outputs.has_matlab != 'true' && matrix.with_optim_toolbox == 'yes' }} | |
| uses: matlab-actions/setup-matlab@v2.6.0 | |
| with: | |
| release: ${{ matrix.matlab }} | |
| cache: true | |
| products: Optimization_Toolbox Parallel_Computing_Toolbox | |
| - name: Set up MATLAB without optimization toolbox | |
| if: ${{ steps.check_matlab.outputs.has_matlab != 'true' && matrix.with_optim_toolbox != 'yes' }} | |
| uses: matlab-actions/setup-matlab@v2.6.0 | |
| with: | |
| release: ${{ matrix.matlab }} | |
| cache: true | |
| products: Parallel_Computing_Toolbox | |
| - name: Link system libgcc to MATLAB if needed | |
| if: startsWith(matrix.os, 'ubuntu') | |
| shell: bash | |
| run: | | |
| matlab_root=$(realpath $(dirname $(which matlab))/../) | |
| echo "MATLAB root is ${matlab_root}" | |
| matlab_libgcc="${matlab_root}/sys/os/glnxa64/libgcc_s.so.1" | |
| echo "MATLAB libgcc is:" | |
| ls -alh ${matlab_libgcc} || exit 42 | |
| echo "gcc strings in MATLAB libgcc are:" | |
| strings ${matlab_libgcc} | grep -iE "^GCC_" | |
| echo "latest gcc version string in MATLAB libgcc is:" | |
| readelf -V ${matlab_libgcc} | grep -oiE 'GCC_([0-9]+)(.[0-9]+){0,2}' | sort -V | tail -1 | |
| system_libgcc="/usr/lib/x86_64-linux-gnu/libgcc_s.so.1" | |
| echo "System libgcc is:" | |
| ls -alh ${system_libgcc} || exit 42 | |
| echo "gcc strings in system libgcc are:" | |
| strings ${system_libgcc} | grep -iE "^GCC_" | |
| echo "latest gcc version string in system libgcc is:" | |
| readelf -V ${system_libgcc} | grep -oiE 'GCC_([0-9]+)(.[0-9]+){0,2}' | sort -V | tail -1 | |
| if [[ "${{ matrix.use_system_libgcc }}" == "true" ]] ; then | |
| ln -sf ${system_libgcc} ${matlab_libgcc} || exit 42 | |
| echo "Linked ${system_libgcc} to ${matlab_libgcc}." | |
| else | |
| echo "Keep ${matlab_libgcc} untouched." | |
| fi | |
| echo "After the operation, MATLAB libgcc is:" | |
| ls -alh ${matlab_libgcc} || exit 42 | |
| echo "gcc strings in MATLAB libgcc are:" | |
| strings ${matlab_libgcc} | grep -iE "^GCC_" | |
| echo "latest gcc version string in MATLAB libgcc is:" | |
| readelf -V ${matlab_libgcc} | grep -oiE 'GCC_([0-9]+)(.[0-9]+){0,2}' | sort -V | tail -1 | |
| - name: Revise getMexLibgcc and compiled.m to print necessary information | |
| shell: bash | |
| run: | | |
| cd matlab/setup_tools || exit 42 | |
| $SEDI 's|\(.*lddOut.*\);|\1|' getMexLibgcc.m | |
| $SEDI 's|\(.*Path.*\);|\1|' getMexLibgcc.m | |
| $SEDI 's|\(.*String.*\);|\1|' getMexLibgcc.m | |
| $SEDI 's|\(.*Version.*\);|\1|' getMexLibgcc.m | |
| cat getMexLibgcc.m | |
| $SEDI 's|\(common_mex_options\s*=\s*.*$\)$|\1\ncommon_mex_options{:}|' compile.m | |
| $SEDI 's|\(.*\s*=\s*getMexLibgcc().gccVersion.*\)|\1\ngetMexLibgcc() |' compile.m | |
| $SEDI 's|\(.*_version\s*=\s*.*\);|\1 |' compile.m | |
| $SEDI 's|\(compiler_options\s*=\s*.*\);|\1 |' compile.m | |
| $SEDI "s|\(if\s*~support_internal_procedures\)|verLessThan('matlab', '25.1'), verLessThan('matlab', '25.2'), compiler_manufacturer, compiler_options, support_internal_procedures\n\1|" compile.m | |
| cat compile.m | |
| - name: Conduct the test | |
| uses: matlab-actions/run-command@v2.3.0 | |
| with: | |
| command: | | |
| ver; | |
| root_dir = pwd(); | |
| cd(fullfile(root_dir, 'matcutest')); install(); which macup | |
| cd(fullfile(root_dir, 'matlab/tests')); | |
| options = struct(); | |
| options.nr = 3; | |
| options.ctol_multiple = 10^(2*str2num('${{ matrix.ctol_indicator }}')); | |
| options.test_feasibility_problems = ${{ matrix.test_feasibility_problems }}; | |
| prof('${{ matrix.solver }}', '${{ matrix.dim }}', '${{ matrix.competitor }}', options); | |
| % Move the files to prepare for uploading artifacts | |
| solver = 'lincoa'; | |
| cd(fullfile(cd(), 'testdata')); | |
| files = dir([solver, '*.summary.*.pdf']) | |
| for ifile = 1 : length(files) | |
| file = fullfile(files(ifile).folder, files(ifile).name) | |
| newfile = fullfile(files(ifile).folder, ['ctol', '${{ matrix.ctol_indicator }}_', '${{ matrix.with_optim_toolbox }}', '_optool_', files(ifile).name]) | |
| movefile(file, newfile); | |
| end | |
| movefile(fullfile(cd(), '*summary*.pdf'), '/tmp/${{ matrix.solver }}_profile_prima/'); | |
| movefile(fullfile(cd(), '*.txt'), '/tmp/${{ matrix.solver }}_profile_prima/'); | |
| files = [dir(['/tmp/', solver, '_profile_prima/*start*']); dir(['/tmp/', solver, '_profile_prima/*end*'])] | |
| for ifile = 1 : length(files) | |
| file = fullfile(files(ifile).folder, files(ifile).name) | |
| newfile = fullfile(files(ifile).folder, ['ctol', '${{ matrix.ctol_indicator }}_', '${{ matrix.with_optim_toolbox }}', '_optool_', files(ifile).name]) | |
| movefile(file, newfile); | |
| end | |
| - name: List problems that started but did not end | |
| # The solver got stuck when solving these problems. Investigate what happened. | |
| if: always() | |
| shell: bash | |
| run: | | |
| solver=${{ matrix.solver }} | |
| cd /tmp/${solver}_profile_prima/ | |
| ls -R1 *${solver}*_start > ${solver}_prob_start | |
| ls -R1 *${solver}*_end > ${solver}_prob_end | |
| diff ${solver}_prob_start ${solver}_prob_end > ${solver}_stuck || : | |
| printf "\n\n>>>>>>>>>>>>>>>>\nProblems that started but did not end:\n\n" | |
| cat ${solver}_stuck | |
| printf "\n<<<<<<<<<<<<<<<<\n\n" | |
| - name: Store artifacts | |
| uses: actions/upload-artifact@v4.3.1 | |
| if: always() # Always run even if the workflow is canceled manually or due to overtime. | |
| with: | |
| name: artifact-${{ matrix.solver }}-${{ matrix.dim }}-${{ matrix.competitor }}-${{ matrix.with_optim_toolbox }}-${{ matrix.ctol_indicator }}-${{ matrix.use_system_libgcc }}-${{ matrix.test_feasibility_problems }} | |
| path: | | |
| /tmp/${{ matrix.solver }}_profile_prima/*summary*.pdf | |
| /tmp/${{ matrix.solver }}_profile_prima/*.txt | |
| /tmp/${{ matrix.solver }}_profile_prima/*prob_start* | |
| /tmp/${{ matrix.solver }}_profile_prima/*prob_end* | |
| /tmp/${{ matrix.solver }}_profile_prima/*stuck* | |
| /tmp/${{ matrix.solver }}_profile_prima/fort.* | |
| - name: Remove the test data | |
| if: always() # Always run even if the workflow is canceled manually or due to overtime. | |
| run: rm -rf ./matlab/tests/testdata && rm -rf /tmp/${{ matrix.solver }}_profile_prima | |
| merge_artifacts: | |
| continue-on-error: true # As of 20240218, this action may fail if there are too many artifacts. We ignore the failure. | |
| if: always() | |
| runs-on: ubuntu-latest | |
| needs: test | |
| steps: | |
| - name: Merge Artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: 00-merged-artifacts | |
| pattern: artifact-* |