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Merge pull request #1971 from materialsproject/auto-dependency-upgrades
Automated dependency upgrades
2 parents f2a4016 + 12b3ba7 commit 0f74285

16 files changed

+300
-348
lines changed

‎mpcontribs-api/requirements/ubuntu-latest_py3.11.txt‎

Lines changed: 23 additions & 28 deletions
Original file line numberDiff line numberDiff line change
@@ -18,15 +18,15 @@ arrow==1.4.0
1818
# via isoduration
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asn1crypto==1.5.1
2020
# via mpcontribs-api (setup.py)
21-
asttokens==3.0.0
21+
asttokens==3.0.1
2222
# via stack-data
2323
atlasq-tschaume==0.11.1.dev2
2424
# via flask-mongorest-mpcontribs
2525
attrs==25.4.0
2626
# via
2727
# jsonschema
2828
# referencing
29-
backports-zstd==1.0.0
29+
backports-zstd==1.1.0
3030
# via flask-compress
3131
beautifulsoup4==4.14.2
3232
# via nbconvert
@@ -38,25 +38,25 @@ blinker==1.9.0
3838
# via mpcontribs-api (setup.py)
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boltons==25.0.0
4040
# via mpcontribs-api (setup.py)
41-
boto3==1.40.66
41+
boto3==1.41.5
4242
# via flask-mongorest-mpcontribs
43-
botocore==1.40.66
43+
botocore==1.41.5
4444
# via
4545
# boto3
4646
# s3transfer
47-
brotli==1.1.0
47+
brotli==1.2.0
4848
# via flask-compress
4949
bytecode==0.17.0
5050
# via ddtrace
51-
certifi==2025.10.5
51+
certifi==2025.11.12
5252
# via requests
5353
cffi==2.0.0
5454
# via
5555
# argon2-cffi-bindings
5656
# cryptography
5757
charset-normalizer==3.4.4
5858
# via requests
59-
click==8.3.0
59+
click==8.3.1
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# via
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# flask
6262
# rq
@@ -76,7 +76,7 @@ cycler==0.12.1
7676
# via matplotlib
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dateparser==1.2.2
7878
# via mpcontribs-api (setup.py)
79-
ddtrace==3.17.2
79+
ddtrace==4.0.0
8080
# via mpcontribs-api (setup.py)
8181
debugpy==1.8.17
8282
# via ipykernel
@@ -110,7 +110,7 @@ flask==2.2.5
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# flask-mongoengine-tschaume
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# flask-rq2
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# flask-sse
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flask-compress==1.22
113+
flask-compress==1.23
114114
# via mpcontribs-api (setup.py)
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flask-marshmallow==1.3.0
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# via mpcontribs-api (setup.py)
@@ -151,7 +151,7 @@ ipykernel==6.29.5
151151
# via
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# nbclassic
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# notebook
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ipython==9.6.0
154+
ipython==9.7.0
155155
# via ipykernel
156156
ipython-genutils==0.2.0
157157
# via
@@ -251,7 +251,7 @@ more-itertools==10.8.0
251251
# via mpcontribs-api (setup.py)
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mpmath==1.3.0
253253
# via sympy
254-
narwhals==2.10.2
254+
narwhals==2.12.0
255255
# via plotly
256256
nbclassic==1.3.3
257257
# via notebook
@@ -274,13 +274,13 @@ nest-asyncio==1.6.0
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# jupyter-client
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# nbclassic
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# notebook
277-
networkx==3.5
277+
networkx==3.6
278278
# via pymatgen
279279
notebook==6.5.7
280280
# via mpcontribs-api (setup.py)
281281
notebook-shim==0.2.4
282282
# via nbclassic
283-
numpy==2.3.4
283+
numpy==2.3.5
284284
# via
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# contourpy
286286
# matplotlib
@@ -320,22 +320,20 @@ pexpect==4.9.0
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# via ipython
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pillow==12.0.0
322322
# via matplotlib
323-
pint==0.25.1
323+
pint==0.25.2
324324
# via mpcontribs-api (setup.py)
325325
platformdirs==4.5.0
326326
# via
327327
# jupyter-core
328328
# pint
329-
plotly==6.4.0
329+
plotly==6.5.0
330330
# via pymatgen
331331
prometheus-client==0.23.1
332332
# via
333333
# jupyter-server
334334
# notebook
335335
prompt-toolkit==3.0.52
336336
# via ipython
337-
protobuf==6.33.0
338-
# via ddtrace
339337
psutil==7.1.3
340338
# via ipykernel
341339
psycopg2-binary==2.9.11
@@ -355,7 +353,7 @@ pygments==2.19.2
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# nbconvert
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pymatgen==2025.10.7
357355
# via mpcontribs-api (setup.py)
358-
pymongo==4.15.3
356+
pymongo==4.15.4
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# via
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# flask-mongorest-mpcontribs
361359
# mongoengine
@@ -396,7 +394,7 @@ pyzmq==27.1.0
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# jupyter-client
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# jupyter-server
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# notebook
399-
redis==7.0.1
397+
redis==7.1.0
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# via
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# flask-rq2
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# flask-sse
@@ -422,7 +420,7 @@ rfc3986-validator==0.1.1
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# jupyter-events
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rfc3987-syntax==1.1.0
424422
# via jsonschema
425-
rpds-py==0.28.0
423+
rpds-py==0.29.0
426424
# via
427425
# jsonschema
428426
# referencing
@@ -437,9 +435,9 @@ ruamel-yaml==0.18.16
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# via
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# monty
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# pymatgen
440-
ruamel-yaml-clib==0.2.14
438+
ruamel-yaml-clib==0.2.15
441439
# via ruamel-yaml
442-
s3transfer==0.14.0
440+
s3transfer==0.15.0
443441
# via boto3
444442
scipy==1.16.3
445443
# via pymatgen
@@ -545,16 +543,13 @@ werkzeug==3.1.3
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# via
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# flasgger-tschaume
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# flask
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wrapt==1.17.3
546+
wrapt==2.0.1
549547
# via ddtrace
550548
zipp==3.23.0
551549
# via importlib-metadata
552-
zope-event==6.0
550+
zope-event==6.1
553551
# via gevent
554-
zope-interface==8.0.1
552+
zope-interface==8.1.1
555553
# via gevent
556554
zstandard==0.25.0
557555
# via mpcontribs-api (setup.py)
558-
559-
# The following packages are considered to be unsafe in a requirements file:
560-
# setuptools

‎mpcontribs-api/requirements/ubuntu-latest_py3.11_extras.txt‎

Lines changed: 24 additions & 29 deletions
Original file line numberDiff line numberDiff line change
@@ -18,15 +18,15 @@ arrow==1.4.0
1818
# via isoduration
1919
asn1crypto==1.5.1
2020
# via mpcontribs-api (setup.py)
21-
asttokens==3.0.0
21+
asttokens==3.0.1
2222
# via stack-data
2323
atlasq-tschaume==0.11.1.dev2
2424
# via flask-mongorest-mpcontribs
2525
attrs==25.4.0
2626
# via
2727
# jsonschema
2828
# referencing
29-
backports-zstd==1.0.0
29+
backports-zstd==1.1.0
3030
# via flask-compress
3131
beautifulsoup4==4.14.2
3232
# via nbconvert
@@ -38,25 +38,25 @@ blinker==1.9.0
3838
# via mpcontribs-api (setup.py)
3939
boltons==25.0.0
4040
# via mpcontribs-api (setup.py)
41-
boto3==1.40.66
41+
boto3==1.41.5
4242
# via flask-mongorest-mpcontribs
43-
botocore==1.40.66
43+
botocore==1.41.5
4444
# via
4545
# boto3
4646
# s3transfer
47-
brotli==1.1.0
47+
brotli==1.2.0
4848
# via flask-compress
4949
bytecode==0.17.0
5050
# via ddtrace
51-
certifi==2025.10.5
51+
certifi==2025.11.12
5252
# via requests
5353
cffi==2.0.0
5454
# via
5555
# argon2-cffi-bindings
5656
# cryptography
5757
charset-normalizer==3.4.4
5858
# via requests
59-
click==8.3.0
59+
click==8.3.1
6060
# via
6161
# flask
6262
# rq
@@ -76,7 +76,7 @@ cycler==0.12.1
7676
# via matplotlib
7777
dateparser==1.2.2
7878
# via mpcontribs-api (setup.py)
79-
ddtrace==3.17.2
79+
ddtrace==4.0.0
8080
# via mpcontribs-api (setup.py)
8181
debugpy==1.8.17
8282
# via ipykernel
@@ -112,7 +112,7 @@ flask==2.2.5
112112
# flask-mongoengine-tschaume
113113
# flask-rq2
114114
# flask-sse
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flask-compress==1.22
115+
flask-compress==1.23
116116
# via mpcontribs-api (setup.py)
117117
flask-marshmallow==1.3.0
118118
# via mpcontribs-api (setup.py)
@@ -155,7 +155,7 @@ ipykernel==6.29.5
155155
# via
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# nbclassic
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# notebook
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ipython==9.6.0
158+
ipython==9.7.0
159159
# via ipykernel
160160
ipython-genutils==0.2.0
161161
# via
@@ -257,7 +257,7 @@ more-itertools==10.8.0
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# via mpcontribs-api (setup.py)
258258
mpmath==1.3.0
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# via sympy
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narwhals==2.10.2
260+
narwhals==2.12.0
261261
# via plotly
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nbclassic==1.3.3
263263
# via notebook
@@ -280,13 +280,13 @@ nest-asyncio==1.6.0
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# jupyter-client
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# nbclassic
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# notebook
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networkx==3.5
283+
networkx==3.6
284284
# via pymatgen
285285
notebook==6.5.7
286286
# via mpcontribs-api (setup.py)
287287
notebook-shim==0.2.4
288288
# via nbclassic
289-
numpy==2.3.4
289+
numpy==2.3.5
290290
# via
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# contourpy
292292
# matplotlib
@@ -327,13 +327,13 @@ pexpect==4.9.0
327327
# via ipython
328328
pillow==12.0.0
329329
# via matplotlib
330-
pint==0.25.1
330+
pint==0.25.2
331331
# via mpcontribs-api (setup.py)
332332
platformdirs==4.5.0
333333
# via
334334
# jupyter-core
335335
# pint
336-
plotly==6.4.0
336+
plotly==6.5.0
337337
# via pymatgen
338338
pluggy==1.6.0
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# via pytest
@@ -343,8 +343,6 @@ prometheus-client==0.23.1
343343
# notebook
344344
prompt-toolkit==3.0.52
345345
# via ipython
346-
protobuf==6.33.0
347-
# via ddtrace
348346
psutil==7.1.3
349347
# via ipykernel
350348
psycopg2-binary==2.9.11
@@ -369,7 +367,7 @@ pygments==2.19.2
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# pytest
370368
pymatgen==2025.10.7
371369
# via mpcontribs-api (setup.py)
372-
pymongo==4.15.3
370+
pymongo==4.15.4
373371
# via
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# flask-mongorest-mpcontribs
375373
# mongoengine
@@ -379,7 +377,7 @@ pyparsing==3.2.5
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# via
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# bibtexparser
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# matplotlib
382-
pytest==8.4.2
380+
pytest==9.0.1
383381
# via mpcontribs-api (setup.py)
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python-dateutil==2.9.0.post0
385383
# via
@@ -412,7 +410,7 @@ pyzmq==27.1.0
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# jupyter-client
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# jupyter-server
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# notebook
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redis==7.0.1
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redis==7.1.0
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# via
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# flask-rq2
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# flask-sse
@@ -438,7 +436,7 @@ rfc3986-validator==0.1.1
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# jupyter-events
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rfc3987-syntax==1.1.0
440438
# via jsonschema
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rpds-py==0.28.0
439+
rpds-py==0.29.0
442440
# via
443441
# jsonschema
444442
# referencing
@@ -453,9 +451,9 @@ ruamel-yaml==0.18.16
453451
# via
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# monty
455453
# pymatgen
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ruamel-yaml-clib==0.2.14
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ruamel-yaml-clib==0.2.15
457455
# via ruamel-yaml
458-
s3transfer==0.14.0
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s3transfer==0.15.0
459457
# via boto3
460458
scipy==1.16.3
461459
# via pymatgen
@@ -561,16 +559,13 @@ werkzeug==3.1.3
561559
# via
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# flasgger-tschaume
563561
# flask
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wrapt==1.17.3
562+
wrapt==2.0.1
565563
# via ddtrace
566564
zipp==3.23.0
567565
# via importlib-metadata
568-
zope-event==6.0
566+
zope-event==6.1
569567
# via gevent
570-
zope-interface==8.0.1
568+
zope-interface==8.1.1
571569
# via gevent
572570
zstandard==0.25.0
573571
# via mpcontribs-api (setup.py)
574-
575-
# The following packages are considered to be unsafe in a requirements file:
576-
# setuptools

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