GAMBLR.predict/NAMESPACE at master · morinlab/GAMBLR.predict · GitHub

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# Generated by roxygen2: do not edit by hand

export("%>%")
export(DLBCLone_KNN)
export(DLBCLone_KNN_predict)
export(DLBCLone_activate)
export(DLBCLone_ensemble_postprocess)
export(DLBCLone_load_optimized)
export(DLBCLone_optimize_params)
export(DLBCLone_predict)
export(DLBCLone_predict_mixture_model)
export(DLBCLone_save_optimized)
export(DLBCLone_summarize_model)
export(DLBCLone_train_mixture_model)
export(DLBCLone_train_test_plot)
export(assemble_genetic_features)
export(basic_umap_scatterplot)
export(classify_bl)
export(classify_dlbcl)
export(classify_fl)
export(complete_missing_from_matrix)
export(construct_reduced_winning_version)
export(make_alluvial)
export(make_and_annotate_umap)
export(make_neighborhood_plot)
export(make_umap_scatterplot)
export(massage_matrix_for_clustering)
export(nearest_neighbor_heatmap)
export(optimize_outgroup)
export(optimize_purity)
export(posthoc_feature_enrichment)
export(process_votes)
export(report_accuracy)
export(summarize_all_ssm_status)
export(tabulate_ssm_status)
export(weighted_knn_predict_with_conf)
import(ComplexHeatmap)
import(DT)
import(FNN)
import(GAMBLR.data)
import(GAMBLR.helpers)
import(caret)
import(dplyr)
import(ggalluvial)
import(ggplot2)
import(ggpubr)
import(ggrepel)
import(ggside)
import(grDevices)
import(mclust)
import(plotly)
import(purrr)
import(randomForest, except = c("combine"))
import(readr)
import(readxl)
import(rlang)
import(shiny)
import(shinybusy)
import(shinyjs)
import(stringr)
import(tibble)
import(tidyr)
import(tidyselect)
import(uwot)
importFrom(circlize,colorRamp2)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,bind_rows)
importFrom(dplyr,ends_with)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_label)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(rlang,sym)
importFrom(stats,setNames)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,separate)
importFrom(utils,head)