Merge pull request #124 from nextstrain/pivot-xec

Switch pivot from JN.1 to XEC

Author: trvrb

config/config.yaml

@@ -54,17 +54,17 @@ models:
   gisaid:
     nextstrain_clades:
       global:
-        pivot: "24A"
+        pivot: "24F"
     pango_lineages:
       global:
-        pivot: "JN.1"
+        pivot: "XEC"
   open:
     nextstrain_clades:
       global:
-        pivot: "24A"
+        pivot: "24F"
     pango_lineages:
       global:
-        pivot: "JN.1"
+        pivot: "XEC"
 
 # Model configs
 mlr_config: "config/mlr-config.yaml"

viz/src/App.jsx

@@ -41,8 +41,8 @@ function App() {
         <h2>Clade growth advantage</h2>
         <p>
           These plots show the estimated growth advantage for given clades relative to clade
-          24A (lineage JN.1). This describes how many more secondary infections a variant causes
-          on average relative to clade 24A. Vertical bars show the 95% HPD. The "hierarchical" panel
+          24F (lineage XEC). This describes how many more secondary infections a variant causes
+          on average relative to clade 24F. Vertical bars show the 95% HPD. The "hierarchical" panel
           shows pooled estimate of growth rates across different locations.
           Results last updated {mlrCladesData?.modelData?.get('updated') || 'loading'}.
         </p>
@@ -64,8 +64,8 @@ function App() {
         <h2>Lineage growth advantage</h2>
         <p>
           These plots show the estimated growth advantage for given Pango lineages relative to
-          lineage JN.1. This describes how many more secondary infections a variant causes
-          on average relative to lineage JN.1. Vertical bars show the 95% HPD.
+          lineage XEC. This describes how many more secondary infections a variant causes
+          on average relative to lineage XEC. Vertical bars show the 95% HPD.
           The "hierarchical" panel shows pooled estimate of growth rates across different locations.
           Results last updated {mlrLineagesData?.modelData?.get('updated') || 'loading'}.
         </p>