Decrease thresholds to better work with open data quantities

Author: trvrb

config/config.yaml

@@ -38,20 +38,20 @@ prepare_data:
     nextstrain_clades:
       global:
         included_days: 150
-        location_min_seq: 1000
+        location_min_seq: 200
         location_min_seq_days: 150
         excluded_locations: "defaults/global_excluded_locations.txt"
-        clade_min_seq: 500
+        clade_min_seq: 200
         clade_min_seq_days: 150
     pango_lineages:
       global:
         included_days: 150
-        location_min_seq: 1000
+        location_min_seq: 200
         location_min_seq_days: 150
         excluded_locations: "defaults/global_excluded_locations.txt"
         clade_min_seq: 1
         clade_min_seq_days: 150
-        collapse_threshold: 350
+        collapse_threshold: 200
 
 # Params for the model run scripts
 models: