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Health status of GIN g-node datalad remote #209

@oesteban

Description

@oesteban

What happened?

CircleCI is currently failing to fetch some of the pre-baked derivatives:

[INFO   ] Remote origin not usable by git-annex; setting annex-ignore 
[INFO   ] https://github.com/nipreps-data/ds001771.git/config download failed: Not Found 
install(ok): /tmp/data/ds001771 (dataset)
[INFO   ] Ensuring presence of Dataset(/tmp/data/ds001771) to get /tmp/data/ds001771 
[INFO   ] Remote origin not usable by git-annex; setting annex-ignore 
[INFO   ] https://github.com/nipreps-data/ds001771-derivatives.git/config download failed: Not Found                           
install(ok): /tmp/data/ds001771/derivatives (dataset)
action summary:                                           
  install (ok: 2)
[INFO   ] Fetching updates for Dataset(/tmp/data/ds001771) 
merge(ok): . (dataset) [Merged origin/master]
update.annex_merge(ok): . (dataset) [Merged annex branch]
update(ok): . (dataset)
[INFO   ] Fetching updates for Dataset(/tmp/data/ds001771/derivatives) 
merge(ok): derivatives (dataset) [Merged origin/master]
update.annex_merge(ok): derivatives (dataset) [Merged annex branch]
update(ok): derivatives (dataset)
action summary:                              
  merge (ok: 2)
  save (notneeded: 1)
  update (ok: 2)
  update.annex_merge (ok: 2)
get(ok): sub-36/anat/sub-36_T2w.nii.gz (file) [from osf-storage...]
get(ok): sub-36/anat/sub-36_T1w.nii.gz (file) [from osf-storage...]
action summary:
  get (notneeded: 2, ok: 2)
Total:   0% 0.00/324M [00:00<?, ? Bytes/s]
Total:  50% 162M/324M [00:10<00:10, 15.1M Bytes/s]0<00:00, 273M Bytes/s]
get(ok): sub-36/dwi/sub-36_acq-AP_dwi.nii.gz (file) [from osf-storage...]                                                                       
get(ok): sub-36/dwi/sub-36_acq-PA_dwi.nii.gz (file) [from osf-storage...]
action summary:
  get (notneeded: 6, ok: 2)
get(ok): sub-36/fmap/sub-36_dir-2_run-1_epi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/fmap/sub-36_dir-1_run-1_epi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/fmap/sub-36_dir-2_run-2_epi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/fmap/sub-36_dir-1_run-2_epi.nii.gz (file) [from osf-storage...]
action summary:
  get (notneeded: 5, ok: 4)
[INFO   ] Ensuring presence of Dataset(/tmp/data/ds001771/derivatives) to get /tmp/data/ds001771/derivatives/smriprep-0.6.0/logs 
[INFO   ] Ensuring presence of Dataset(/tmp/data/ds001771/derivatives) to get /tmp/data/ds001771/derivatives/smriprep-0.6.0/sub-36 
get(error): smriprep-0.6.0/sub-36/anat/sub-36_desc-aseg_dseg.nii.gz (file) ['MD5E-s1316285--7e36fd7546e42d6c56d53453e5415b5f.nii.gz'      
'MD5E-s1316285--7e36fd7546e42d6c56d53453e5415b5f.nii.gz'
'MD5E-s1316285--7e36fd7546e42d6c56d53453e5415b5f.nii.gz']
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_label-WM_probseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_desc-aparcaseg_dseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_desc-brain_mask.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_desc-preproc_T1w.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_label-GM_probseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_dseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_label-CSF_probseg.nii.gz (file) [from osf-storage...]
get(impossible): smriprep-0.6.0/sub-36 (directory) [could not get some content in /tmp/data/ds001771/derivatives/smriprep-0.6.0/sub-36 ['/tmp/data/ds001771/derivatives/smriprep-0.6.0/sub-36/anat/sub-36_desc-aseg_dseg.nii.gz']]
action summary:
  get (error: 1, impossible: 1, notneeded: 3, ok: 7)

Exited with code exit status 1

What command did you use?

CircleCI `get_data` build.

What version of the software are you running?

master

How are you running this software?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

Anatomical derivatives

Please copy and paste any relevant log output.

Additional information / screenshots

No response

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