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bugSomething isn't workingSomething isn't working
Description
What happened?
CircleCI is currently failing to fetch some of the pre-baked derivatives:
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] https://github.com/nipreps-data/ds001771.git/config download failed: Not Found
install(ok): /tmp/data/ds001771 (dataset)
[INFO ] Ensuring presence of Dataset(/tmp/data/ds001771) to get /tmp/data/ds001771
[INFO ] Remote origin not usable by git-annex; setting annex-ignore
[INFO ] https://github.com/nipreps-data/ds001771-derivatives.git/config download failed: Not Found
install(ok): /tmp/data/ds001771/derivatives (dataset)
action summary:
install (ok: 2)
[INFO ] Fetching updates for Dataset(/tmp/data/ds001771)
merge(ok): . (dataset) [Merged origin/master]
update.annex_merge(ok): . (dataset) [Merged annex branch]
update(ok): . (dataset)
[INFO ] Fetching updates for Dataset(/tmp/data/ds001771/derivatives)
merge(ok): derivatives (dataset) [Merged origin/master]
update.annex_merge(ok): derivatives (dataset) [Merged annex branch]
update(ok): derivatives (dataset)
action summary:
merge (ok: 2)
save (notneeded: 1)
update (ok: 2)
update.annex_merge (ok: 2)
get(ok): sub-36/anat/sub-36_T2w.nii.gz (file) [from osf-storage...]
get(ok): sub-36/anat/sub-36_T1w.nii.gz (file) [from osf-storage...]
action summary:
get (notneeded: 2, ok: 2)
Total: 0% 0.00/324M [00:00<?, ? Bytes/s]
Total: 50% 162M/324M [00:10<00:10, 15.1M Bytes/s]0<00:00, 273M Bytes/s]
get(ok): sub-36/dwi/sub-36_acq-AP_dwi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/dwi/sub-36_acq-PA_dwi.nii.gz (file) [from osf-storage...]
action summary:
get (notneeded: 6, ok: 2)
get(ok): sub-36/fmap/sub-36_dir-2_run-1_epi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/fmap/sub-36_dir-1_run-1_epi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/fmap/sub-36_dir-2_run-2_epi.nii.gz (file) [from osf-storage...]
get(ok): sub-36/fmap/sub-36_dir-1_run-2_epi.nii.gz (file) [from osf-storage...]
action summary:
get (notneeded: 5, ok: 4)
[INFO ] Ensuring presence of Dataset(/tmp/data/ds001771/derivatives) to get /tmp/data/ds001771/derivatives/smriprep-0.6.0/logs
[INFO ] Ensuring presence of Dataset(/tmp/data/ds001771/derivatives) to get /tmp/data/ds001771/derivatives/smriprep-0.6.0/sub-36
get(error): smriprep-0.6.0/sub-36/anat/sub-36_desc-aseg_dseg.nii.gz (file) ['MD5E-s1316285--7e36fd7546e42d6c56d53453e5415b5f.nii.gz'
'MD5E-s1316285--7e36fd7546e42d6c56d53453e5415b5f.nii.gz'
'MD5E-s1316285--7e36fd7546e42d6c56d53453e5415b5f.nii.gz']
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_label-WM_probseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_desc-aparcaseg_dseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_desc-brain_mask.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_desc-preproc_T1w.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_label-GM_probseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_dseg.nii.gz (file) [from osf-storage...]
get(ok): smriprep-0.6.0/sub-36/anat/sub-36_label-CSF_probseg.nii.gz (file) [from osf-storage...]
get(impossible): smriprep-0.6.0/sub-36 (directory) [could not get some content in /tmp/data/ds001771/derivatives/smriprep-0.6.0/sub-36 ['/tmp/data/ds001771/derivatives/smriprep-0.6.0/sub-36/anat/sub-36_desc-aseg_dseg.nii.gz']]
action summary:
get (error: 1, impossible: 1, notneeded: 3, ok: 7)
Exited with code exit status 1
What command did you use?
CircleCI `get_data` build.What version of the software are you running?
master
How are you running this software?
Docker
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
Anatomical derivatives
Please copy and paste any relevant log output.
Additional information / screenshots
No response
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bugSomething isn't workingSomething isn't working