rel(25.0.0rc1) [skip ci]

Author: mgxd

CHANGES.md

@@ -4,16 +4,21 @@ A new minor release with some improvements to anatomical to template spatial nor
 
 Registration will now prioritize the same modality as the anatomical template, if available.
 
-A new flag `--norm-csf` performs CSF normalization on the anatomical template prior to template registration.
+A new flag `--norm-csf` performs normalization on the lower bound of CSF values prior to template registration.
 
 A new flag `--multi-step-reg` adds an intermediate step when registering to MNI152NLin6Asym, first performing anatomical -> MNIInfant:cohort-X (age matched by default), and then concatenates the transform with an already computed MNIInfant -> MNI152NLin6Asym.
 
 Both of these flags are experimental and disabled unless requested, but comparisons and feedback with your data are helpful for future determinations!
 
 
-  * ENH: Add flag for multi-step registration to adult templates (#415)
-  * FEAT: Option to normalize CSF prior to template registration (#419)
+  * ENH: Output anatomical coregistration transform + report (#437)
+  * ENH: Minimize clipping prior to surface reconstruction with MCRIBS (#436)
+  * ENH: Output fsLR meshes on subject surfaces (#427)
+  * ENH: Add flag for multi-step registration to adult templates (#415) (#425) (#430) (#433)
+  * ENH: Option to normalize CSF prior to template registration (#419)
   * ENH: Expand template registration to use either anatomical modality (#418)
+  * FIX: Reduce range that `--surface-recon-method auto` recommends MCRIBS (#438)
+  * FIX: Allow T2 only without the use of `--derivatives`
   * FIX: New styling catches (#417)
   * FIX: Default surface recon method should be None (#416)
   * TST: Build workflow across different conditions (#409)

requirements.txt

@@ -33,9 +33,9 @@ bidsschematools==1.0.0
     # via bids-validator
 bokeh==3.5.2
     # via tedana
-boto3==1.36.3
+boto3==1.36.5
     # via datalad
-botocore==1.36.3
+botocore==1.36.5
     # via
     #   boto3
     #   s3transfer
@@ -83,7 +83,7 @@ fasteners==0.19
     # via datalad
 filelock==3.17.0
     # via nipype
-fonttools==4.55.4
+fonttools==4.55.5
     # via matplotlib
 formulaic==0.5.2
     # via pybids
@@ -232,7 +232,7 @@ nitransforms==24.1.1
     #   nibabies (pyproject.toml)
     #   niworkflows
     #   sdcflows
-niworkflows==1.12.1
+niworkflows==1.12.2
     # via
     #   nibabies (pyproject.toml)
     #   sdcflows
@@ -384,7 +384,7 @@ rpds-py==0.22.3
     # via
     #   jsonschema
     #   referencing
-s3transfer==0.11.1
+s3transfer==0.11.2
     # via boto3
 scikit-image==0.25.0
     # via
@@ -465,7 +465,7 @@ tqdm==4.67.1
     #   robustica
     #   tedana
     #   templateflow
-traits==6.4.3
+traits==7.0.1
     # via nipype
 transforms3d==0.4.2
     # via niworkflows