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Description
I'm getting a server error message when trying to retrieve the transcripts for the gene "LYST"
http://my.local.server:8000/VariantValidator/tools/gene2transcripts/LYST?content-type=application%2Fjson
{
"message": "Internal Server Error"
}
Response headers
connection: keep-alive
content-length: 36
content-type: application/json
date: Fri, 16 Sep 2022 09:45:33 GMT
server: gunicorn
Curiously enough validation of specific transcript variants works just fine:
http://my.local.server:8000/VariantValidator/variantvalidator/GRCh37/NM_000081.4(LYST)%3Ac.2048C%3EA/NM_000081.4?content-type=application%2Fjson
{
"NM_000081.4:c.2048C>A": {
...
"hgvs_refseqgene_variant": "",
"hgvs_transcript_variant": "NM_000081.4:c.2048C>A",
"primary_assembly_loci": {
"grch37": {
"hgvs_genomic_description": "NC_000001.10:g.235972070G>T",
"vcf": {
"alt": "T",
"chr": "1",
"pos": "235972070",
"ref": "G"
}
},
...
"reference_sequence_records": {
"protein": "https://www.ncbi.nlm.nih.gov/nuccore/NP_000072.2",
"transcript": "https://www.ncbi.nlm.nih.gov/nuccore/NM_000081.4"
},
...
"flag": "gene_variant",
"metadata": {
"variantvalidator_hgvs_version": "2.0.2.dev1+g6ecbf8e",
"variantvalidator_version": "2.1.1.dev2+g294fd63",
"vvdb_version": "vvdb_2022_04",
"vvseqrepo_db": "VV_SR_2022_02/master",
"vvta_version": "vvta_2022_02"
}
}
Version Info:
rest_VariantValidator
2.0.1.dev10+g00b5072.d20220705
[ Base URL: / ]
/swagger.json
By continuing to use this service you agree to our terms and conditions of Use
[Terms and Conditions](https://github.com/openvar/variantValidator/blob/master/README.md)
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[VariantValidator](https://github.com/openvar/rest_variantValidator) version 2.1.1.dev2+g294fd63
[VariantFormatter](https://github.com/openvar/variantFormatter) version 2.1.1.dev2+g726ebad
[vv_hgvs](https://github.com/openvar/vv_hgvs) version 2.0.2.dev1+g6ecbf8e
[VVTA](https://www528.lamp.le.ac.uk/) release vvta_2022_02
[vvSeqRepo](https://www528.lamp.le.ac.uk/) release VV_SR_2022_02
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