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    64 repositories

    • sophys-web

      Public
      Bluesky http-server client apps developed by the Control Software Group @LNLS/CNPEM.
      TypeScript
      •
      GNU General Public License v3.0
      •2•4•2•2•Updated Nov 28, 2025Nov 28, 2025

    • AtomPacker

      Public
      A python package for packing nanoclusters into supramolecular cages.
      modelingpython-packagenanoparticlesnanoclusterssupramolecular-cagesatom-packing
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 28, 2025Nov 28, 2025

    • iguape

      Public
      Iguape (Paineira Graphical User Interface) is a program for visualization and processing of XRD measurements during in situ experiments at Paineira
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 27, 2025Nov 27, 2025

    • mxcubecore

      Public
      Backend used by MXCuBE
      Python
      •
      GNU Lesser General Public License v3.0
      •56•0•0•0•Updated Nov 27, 2025Nov 27, 2025

    • mxcubeweb

      Public
      MXCuBE-Web
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •45•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • mxcubeweb-lnls

      Public
      LNLS configuration for MXCuBE Web
      0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • MarvinDocs

      Public
      Repositório de documentação produzido pelo mdbook para o HPCC Marvin no LNBio/CNPEM
      Creative Commons Attribution 4.0 International
      •2•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • mbed-caju-lnls

      Public
      This repository provides the CAJU Board Support Package for Mbed OS CE.
      C
      •0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • mbed-os-lnls

      Public
      Fork of the official Mbed OS CE repository.
      C
      •
      Other
      •0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

    • MAS-ProteoGenScope

      Public
      Proteogenomics discovery pipeline of alternative isoforms and proteoforms pipeline
      MIT License
      •0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • MAS-RNAseq

      Public
      Transcriptomics Pipeline of MAS-Team at LNBIO/CNPEM
      0•0•0•0•Updated Nov 17, 2025Nov 17, 2025

    • arara

      Public
      Analisador de Reflexões de Aquisições de Raios-X
      TypeScript
      •0•2•0•0•Updated Nov 12, 2025Nov 12, 2025

    • hpc-containers

      Public
      Apptainer/Singularity containers for HPC clusters
      singularityapptainer
      Lua
      •1•0•0•1•Updated Nov 11, 2025Nov 11, 2025

    • epics-in-docker

      Public
      Container images with EPICS and modules
      Shell
      •3•7•14•9•Updated Nov 11, 2025Nov 11, 2025

    • ADPimega

      Public
      EPICS areaDetector driver for the PiMega detectors
      C++
      •
      Other
      •2•5•12•6•Updated Nov 7, 2025Nov 7, 2025

    • CellViability

      Public
      Cell viability in microscopy images.
      HTML
      •0•0•9•1•Updated Nov 6, 2025Nov 6, 2025

    • sophys-live-view

      Public
      Live and offline data visualizer, mainly for Bluesky-based systems
      Python
      •
      GNU Lesser General Public License v3.0
      •0•1•0•1•Updated Nov 6, 2025Nov 6, 2025

    • sophys-common

      Public
      A collection of Bluesky and Ophyd utility code for SIRIUS beamlines and support groups
      kafkablueskyophydsophys
      Python
      •
      GNU Lesser General Public License v3.0
      •3•2•5•2•Updated Nov 5, 2025Nov 5, 2025

    • conv-fastcorrs-epics-ioc

      Public
      EPICS IOC to convert current measurements to kicks and vice versa.
      Python
      •0•1•0•0•Updated Nov 4, 2025Nov 4, 2025

    • mbed-mods

      Public
      Mbed OS-based modules providing common functionalities and a standardized way of structuring the firmware.
      C++
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Oct 28, 2025Oct 28, 2025

    • ssc-cdi

      Public
      Python
      •
      Other
      •1•2•4•0•Updated Oct 24, 2025Oct 24, 2025

    • sophys-gui

      Public
      Python
      •
      GNU Lesser General Public License v3.0
      •1•2•1•1•Updated Oct 21, 2025Oct 21, 2025

    • spidr4py

      Public
      Nikhef spidr4py repository mirror
      MIT License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • sophys-cli-extensions

      Public
      SIRIUS-specific extensions for the sophys-cli project, dealing with code customized to SIRIUS beamlines
      Python
      •
      GNU General Public License v3.0
      •1•2•0•1•Updated Oct 9, 2025Oct 9, 2025

    • sophys-cli-core

      Public
      Core functionality for the sophys-cli project, a commandline interface for Bluesky orchestration at SIRIUS
      Python
      •
      GNU Lesser General Public License v3.0
      •1•1•2•0•Updated Oct 9, 2025Oct 9, 2025

    • MAS-lnbio-SCP-biofluid

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 7, 2025Oct 7, 2025

    • annotat3d

      Public
      Annotat3D is a modern web application designed for interactive segmentation of volumetric images.
      HTML
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Oct 3, 2025Oct 3, 2025

    • harpia

      Public
      HARPIA (High AlgoRithmic Performance for Image Analysis) is a Sirius project for Synchrotron images analysis. HARPIA is dedicated to implement image processing and analysis algorithms, focused on image segmentation and parallel programming.
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Oct 3, 2025Oct 3, 2025

    • PyMOL4Win

      Public
      Open Source PyMOL for Windows
      4•17•0•0•Updated Sep 25, 2025Sep 25, 2025

    • allpix-squared

      Public
      C++
      •
      MIT License
      •26•0•0•1•Updated Sep 16, 2025Sep 16, 2025