Sali Lab

All

87 repositories

imp_nightly_builds
Public
Infrastructure to build and test IMP on a nightly basis
Python
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Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Nov 26, 2025Nov 26, 2025
imp
Public
The Integrative Modeling Platform
python c-plus-plus structural-biology protein-structure integrative-modeling
C++
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GNU General Public License v3.0
•31•79•63•0•Updated Nov 17, 2025Nov 17, 2025
homebrew-salilab
Public
🍻 Sali Lab formulae for homebrew
ruby homebrew formulae science
Ruby
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Creative Commons Attribution Share Alike 4.0 International
•0•1•0•0•Updated Nov 15, 2025Nov 15, 2025
imp_gpu_benchmarks
Public
Feasibility study for an IMP GPU implementation
C++
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MIT License
•0•0•0•0•Updated Nov 14, 2025Nov 14, 2025
saliweb
Public
Simple framework for web services in the Sali lab
python perl-cgi web-framework
Python
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GNU Lesser General Public License v2.1
•3•5•1•0•Updated Nov 14, 2025Nov 14, 2025
modloop
Public
Web server for automated modeling of loops in protein structures
protein-structure web-service loop-prediction
Python
•
GNU Lesser General Public License v2.1
•2•6•0•0•Updated Nov 12, 2025Nov 12, 2025
lab_website
Public
Source files for parts of the Sali Lab website
HTML
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Nov 10, 2025Nov 10, 2025
allosmod-lib
Public
Protocol to model with allostery
protein-structure allostery
Python
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GNU Lesser General Public License v2.1
•0•5•0•0•Updated Nov 6, 2025Nov 6, 2025
conda-recipes
Public
Recipes for the conda package manager
conda
Shell
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Creative Commons Attribution Share Alike 4.0 International
•2•3•0•0•Updated Nov 6, 2025Nov 6, 2025
IHMValidation
Public
Validation software for integrative models deposited to PDB
Python
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MIT License
•2•3•15•0•Updated Nov 5, 2025Nov 5, 2025
salign
Public
Web service for multiple protein sequence/structure alignment
protein-structure web-service sequence-alignment
Perl
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GNU Lesser General Public License v2.1
•0•0•0•0•Updated Nov 4, 2025Nov 4, 2025
evaluation
Public
Web service for evaluating protein structure models
protein-structure quality-estimation web-service
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Nov 4, 2025Nov 4, 2025
metamodeling
Public
MATLAB
•2•6•11•0•Updated Nov 2, 2025Nov 2, 2025
threading
Public
IMP module to sample sequence threading
Python
•0•1•0•1•Updated Nov 1, 2025Nov 1, 2025
npctransport
Public
IMP module for simulating transport through the NPC.
C++
•3•3•6•0•Updated Nov 1, 2025Nov 1, 2025
pmi
Public
Python Modeling Interface
python structural-biology protein-structure integrative-modeling
Python
•12•13•37•1•Updated Nov 1, 2025Nov 1, 2025
imp_coding_tutorial
Public
Introduction to writing IMP code
c-plus-plus tutorial integrative-modeling
Python
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Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Nov 1, 2025Nov 1, 2025
systems-web
Public
Web application to show integrative modeling "systems" pages
Python
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MIT License
•0•0•0•0•Updated Oct 29, 2025Oct 29, 2025
ligscore
Public
Web service for scoring protein-ligand complexes
protein-structure ligand-screening web-service
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Oct 17, 2025Oct 17, 2025
rmf
Public
The library to support reading and writing of RMF files.
python c-plus-plus structural-biology protein-structure integrative-modeling
C++
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Apache License 2.0
•0•9•7•0•Updated Oct 17, 2025Oct 17, 2025
mdt
Public
Generate frequency tables used by Modeller and IMP.
statistics protein-structure sequence-alignments
C
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GNU General Public License v2.0
•0•0•0•0•Updated Oct 17, 2025Oct 17, 2025
rmf_chimerax
Public
ChimeraX plugin to read and visualize RMF files
structural-biology integrative-modeling
Python
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MIT License
•0•2•0•0•Updated Oct 17, 2025Oct 17, 2025
tutorial_tools
Public
🛠 Support infrastructure useful for all IMP tutorials
python tutorial build-tools
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Oct 17, 2025Oct 17, 2025
pyRMSD
Public
pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is specially tuned to do fast collective RMSD calculations, as pairwise RMSD matrices.
C++
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Other
•14•4•0•0•Updated Oct 17, 2025Oct 17, 2025
allosmod
Public
Web service for simulations on a user-provided energy landscape
protein-structure web-service allostery
Perl
•
GNU Lesser General Public License v2.1
•0•1•0•0•Updated Oct 16, 2025Oct 16, 2025
imp_website
Public
Website for the IMP project
php website
PHP
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Creative Commons Attribution Share Alike 4.0 International
•1•0•0•0•Updated Oct 15, 2025Oct 15, 2025
saxsmerge
Public
Web server for merging SAXS profiles
protein-structure web-service small-angle-xray saxs-profiles
Python
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GNU Lesser General Public License v2.1
•1•0•0•0•Updated Oct 13, 2025Oct 13, 2025
itcell
Public
Integrative T-cell epitope prediction web service
prediction web-service
Python
•
GNU Lesser General Public License v2.1
•0•3•0•0•Updated Oct 13, 2025Oct 13, 2025
pcss-web
Public
Web server for peptide classification using sequence and structure
prediction web-service
Perl
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GNU Lesser General Public License v2.1
•0•1•0•0•Updated Oct 13, 2025Oct 13, 2025
multifoxs
Public
Web server for multi-state modeling with SAXS profiles
protein-structure multi-state web-service saxs-profiles
Python
•
GNU Lesser General Public License v2.1
•2•1•0•0•Updated Oct 13, 2025Oct 13, 2025