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- .github/workflows/linux-CI.yml+32
- .github/workflows/macos-CI.yml+32
- .github/workflows/pypi.yml+83
- CMakeLists.txt+2-2
- MANIFEST.in+2-1
- Makefile+98-33
- README.md+70-47
- example.c+2-1
- include/abpoa.h+17-6
- include/simd_instruction.h+8-192
- include/simde+1-1
- python/README.md+1
- python/cabpoa.pxd+3-4
- python/pyabpoa.pyx+20-8
- setup.py+21-19
- src/abpoa.c+41-15
- src/abpoa.h+17-6
- src/abpoa_align.c+40-19
- src/abpoa_align_simd.c+342-721
- src/abpoa_align_simd.h+1-2
- src/abpoa_dispatch_simd.c+83
- src/abpoa_graph.c+124-23
- src/abpoa_graph.h+2
- src/abpoa_output.c+771-380
- src/abpoa_output.h+32
- src/abpoa_plot.c+1-1
- src/abpoa_seed.c+30-31
- src/abpoa_seq.c+14-1
- src/abpoa_seq.h+1
- src/abpoa_simd.c+622
- src/abpoa_simd.h+36
- src/simd_check.c-20
- src/simd_instruction.h+8-192
- sub_example.c+12-6
- test_data/heter.fq+60
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