Merge branch 'master' of https://github.com/rocker-org/ml

Author: cboettig

.github/workflows/docker-gpu-image.yml

@@ -16,7 +16,7 @@ jobs:
     runs-on: ubuntu-latest
     permissions: write-all
     env:
-      BASE: 'quay.io/jupyter/pytorch-notebook:cuda12-ubuntu-24.04'
+      BASE: 'quay.io/jupyter/pytorch-notebook:cuda12-python-3.12'
     steps:
     # For biggish images, github actions runs out of disk space.
     # So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use

Dockerfile

@@ -1,4 +1,4 @@
-ARG BASE=quay.io/jupyter/minimal-notebook:ubuntu-24.04
+ARG BASE=quay.io/jupyter/minimal-notebook:python-3.12
 
 # cuda image uses:
 # ARG BASE=quay.io/jupyter/pytorch-notebook:cuda12-ubuntu-24.04

Rprofile

@@ -32,6 +32,8 @@ local({
     options(bspm.sudo = TRUE)
     options(bspm.version.check=FALSE)
     suppressMessages(bspm::enable())
+    # workaround for install.packages() stdin hang in RStudio session
+    assignInNamespace("system2nowarn", function(...) suppressWarnings(system2(..., stdin="/dev/null")), "bspm")
 
   }
 

install.r

@@ -1,4 +1,5 @@
 install.packages(c(
+'archive',
 'languageserver',
 'httpgd',
 'quarto',

install_rstudio.sh

@@ -72,6 +72,6 @@ echo "lock-type=advisory" >/etc/rstudio/file-locks
 cp /etc/rstudio/rserver.conf /etc/rstudio/disable_auth_rserver.conf
 echo "auth-none=1" >>/etc/rstudio/disable_auth_rserver.conf
 
-
-su ${NB_USER} -c "/opt/conda/bin/conda install -y jupyter-rsession-proxy"
+# don't assume conda, let package manager handle this
+# su ${NB_USER} -c "/opt/conda/bin/conda install -y jupyter-rsession-proxy"
 

vscode-extensions.txt

@@ -4,7 +4,7 @@ ms-vscode.live-server
 quarto.quarto
 posit.shiny
 reditorsupport.r
-continue.continue
 alefragnani.project-manager
 saoudrizwan.claude-dev
+posit.air-vscode