diff --git a/.python-version b/.python-version index e4fba21..c8cfe39 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.12 +3.10 diff --git a/README.md b/README.md index fd75122..b705dcb 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ You will need to have an account on Seqera Platform (see [Plans and pricing](htt 1. [Seqera Platform CLI (`>=0.11.0`)](https://github.com/seqeralabs/tower-cli#1-installation) -2. [Python (`>=3.8`)](https://www.python.org/downloads/) +2. [Python (`>=3.10`)](https://www.python.org/downloads/) 3. [PyYAML](https://pypi.org/project/PyYAML/) diff --git a/pyproject.toml b/pyproject.toml index efba119..fee80a3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,7 +3,7 @@ name = "seqerakit" version = "0.5.6" description = "Automate creation of Seqera Platform resources" readme = "README.md" -requires-python = ">=3.8,<4" +requires-python = ">=3.10,<4" keywords = [ "nextflow", "bioinformatics", @@ -20,7 +20,13 @@ authors = [ # TODO maintainers = [{ name = "Esha Joshi", email = "esha.joshi@seqera.io" }] # TODO https://pypi.org/classifiers/ -classifiers = ["License :: OSI Approved :: Apache Software License"] +classifiers = [ + "License :: OSI Approved :: Apache Software License", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", +] dependencies = ["pyyaml>=6.0.0", "typer[all]>=0.15.1"] [project.urls] Homepage = "https://seqera.io/" diff --git a/seqerakit/cli.py b/seqerakit/cli.py index e45d90f..3893d46 100644 --- a/seqerakit/cli.py +++ b/seqerakit/cli.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. @@ -19,15 +19,15 @@ """ import logging -import sys import os +import sys from enum import Enum -from typing import Optional, List from pathlib import Path import typer +import yaml # noqa: F401 -from seqerakit import seqeraplatform, helper, overwrite +from seqerakit import helper, overwrite, seqeraplatform from seqerakit.seqeraplatform import ( ResourceExistsError, ResourceNotFoundError, @@ -206,7 +206,7 @@ def find_yaml_files(path_list=None): @app.command() def main( - yaml: Optional[List[str]] = typer.Argument( + yaml_files: list[str] | None = typer.Argument( None, help="One or more YAML files with Seqera Platform resource definitions.", ), @@ -235,7 +235,7 @@ def main( "-d", help="Print the commands that would be executed.", ), - version: Optional[bool] = typer.Option( + version: bool | None = typer.Option( None, "--version", "-v", @@ -248,30 +248,30 @@ def main( "--delete", help="Recursively delete resources defined in the YAML files.", ), - cli_args: Optional[List[str]] = typer.Option( + cli_args: list[str] | None = typer.Option( None, "--cli", help="Additional Seqera Platform CLI specific options to be passed, " "enclosed in double quotes (e.g. '--cli=\"--insecure\"'). Can be specified multiple times.", ), - targets: Optional[str] = typer.Option( + targets: str | None = typer.Option( None, "--targets", help="Specify the resources to be targeted for creation in a YAML file through " "a comma-separated list (e.g. '--targets=teams,participants').", ), - target: Optional[List[str]] = typer.Option( + target: list[str] | None = typer.Option( None, "--target", help="Specify a resource and optionally a name to target " "(e.g. '--target pipelines=my-pipeline'). Can be specified multiple times.", ), - env_file: Optional[str] = typer.Option( + env_file: str | None = typer.Option( None, "--env-file", help="Path to a YAML file containing environment variables for configuration.", ), - on_exists: Optional[str] = typer.Option( + on_exists: str | None = typer.Option( None, "--on-exists", help="Globally specifies the action to take if a resource already exists.", @@ -340,7 +340,7 @@ def main( logging.error(e) raise typer.Exit(code=1) - yaml_files = find_yaml_files(yaml) + yaml_files_list = find_yaml_files(yaml_files) block_manager = BlockParser( sp, @@ -361,7 +361,7 @@ def main( # and get a dictionary of command line arguments try: cmd_args_dict = helper.parse_all_yaml( - yaml_files, destroy=delete, targets=targets, target=target, sp=sp + yaml_files_list, destroy=delete, targets=targets, target=target, sp=sp ) for block, args_list in cmd_args_dict.items(): for args in args_list: diff --git a/seqerakit/computeenvs.py b/seqerakit/computeenvs.py index 785103c..956a37c 100644 --- a/seqerakit/computeenvs.py +++ b/seqerakit/computeenvs.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/seqerakit/helper.py b/seqerakit/helper.py index 0f1c474..aa85c6f 100644 --- a/seqerakit/helper.py +++ b/seqerakit/helper.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/seqerakit/overwrite.py b/seqerakit/overwrite.py index 01c583b..41f574b 100644 --- a/seqerakit/overwrite.py +++ b/seqerakit/overwrite.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/seqerakit/pipelines.py b/seqerakit/pipelines.py index 92d7005..3aba90e 100644 --- a/seqerakit/pipelines.py +++ b/seqerakit/pipelines.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/seqerakit/seqeraplatform.py b/seqerakit/seqeraplatform.py index f638097..f2b7617 100644 --- a/seqerakit/seqeraplatform.py +++ b/seqerakit/seqeraplatform.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. diff --git a/seqerakit/utils.py b/seqerakit/utils.py index a1b1359..87f3e2b 100644 --- a/seqerakit/utils.py +++ b/seqerakit/utils.py @@ -1,4 +1,4 @@ -# Copyright 2023, Seqera +# Copyright 2025, Seqera # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use 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