bio_studio/opencode.json at master · vimalinx/bio_studio · GitHub

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{
    "$schema": "https://opencode.ai/config.json",
    "mcp": {
        "bio-sequence": {
            "type": "local",
            "command": [
                "/home/vimalinx/miniforge3/envs/bio/bin/python",
                "/home/vimalinx/bio_studio/mcp-servers/bio-sequence-mcp/sequence_server.py"
            ],
            "enabled": true,
            "description": "DNA/RNA/蛋白质序列分析"
        },
        "bio-structure": {
            "type": "local",
            "command": [
                "/home/vimalinx/miniforge3/envs/bio/bin/python",
                "/home/vimalinx/bio_studio/mcp-servers/bio-structure-mcp/structure_server.py"
            ],
            "enabled": true,
            "description": "蛋白质结构分析和预测"
        },
        "bio-database": {
            "type": "local",
            "command": [
                "/home/vimalinx/miniforge3/envs/bio/bin/python",
                "/home/vimalinx/bio_studio/mcp-servers/bio-database-mcp/database_server.py"
            ],
            "enabled": true,
            "description": "生物数据库查询（NCBI、UniProt等）"
        },
        "bio-rag": {
            "type": "local",
            "command": [
                "npx",
                "-y",
                "mcp-local-rag@latest",
                "/home/vimalinx/bio_studio/docs"
            ],
            "enabled": true,
            "description": "生物工作室文档 RAG 知识库"
        },
        "bio-rag-data": {
            "type": "local",
            "command": [
                "npx",
                "-y",
                "mcp-local-rag@latest",
                "/home/vimalinx/bio_studio/data"
            ],
            "enabled": true,
            "description": "生物数据集 RAG 知识库"
        }
    }
}