This repository contains the auxillary datasets, and documentation generated during the development, evaluation, and analysis of the AgBioData DatabaseFinder tool.
MicroPublication_AgDataFinderToolDataset
– This file contains information on each of the included databases the finder tool can point to.
- Database Name
- Database URL
- Organisms/species are represented
- Brief summary about the database.
- Contact URL or contact email address
- Data submission information landing page URL
- Data submission policy
For each of the remaining columns they represent specific data types. The values can be empty/null (no data), hosted (data is hosted by database) or direct submissions accepted (data can be contributed directly to the database). Definitions for each of the datatypes can be found at: https://www.agbiodata.org/db-finder-datatypes
- Database cross-mapping
- Gene expression
- Gene functional annotation
- Gene regulation
- Gene report
- Genetic map
- Genetic variation
- Genome analysis
- Genome annotation
- Genomics
- Genotype data
- Geographic location data ( passport data)
- Homology-based gene prediction
- Image
- Image annotation
- Metabolic pathway prediction
- Metabolomics
- Metadata
- Nucleic acid sites, features and motifs
- Ontology and terminology
- Pathway annotations
- Phenomics
- Phenotype
- Phylogenetic Data
- Protein interaction data
- Protein structure
- Proteomics
- Protocol
- QTL map
- Molecular sequence annotation
- Sequence features
- Whole genome association study
- Environmental Data
- Pedigree
This DATA – "AgBioData DatabaseFinder Supplementary" is made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/. Any rights in individual contents of the database are licensed under the Database Contents License: http://opendatacommons.org/licenses/dbcl/1.0/