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BodenmillerGroup / cytomapper Public

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Implementing a ZARR reader in cytomapper#82

Open

nilseling wants to merge 16 commits intodevelBodenmillerGroup/cytomapper:develfrom

zarr_readerBodenmillerGroup/cytomapper:zarr_readerCopy head branch name to clipboard

Conversation Commits16 (16)Checks Files changed

Open

Implementing a ZARR reader in cytomapper#82
nilseling wants to merge 16 commits intodevelfrom
zarr_reader

Commits

Commits on Sep 18, 2023

Start on Zarr reader
nilseling
committed
Started on vignette
nilseling
committed
Merge branch 'devel' into zarr_reader
nilseling
committed
Reading in images works
nilseling
committed
Read in channel names
nilseling
committed

Commits on Sep 19, 2023

Split into two functions
nilseling
committed
Read in axes from metadata
nilseling
committed
Removed unneded code
nilseling
committed
Fixed bugs in readImagesFromZARR for spatialData
nilseling
committed
Read metadata from zmetadata
nilseling
committed
Get right resolution
nilseling
committed
OMENGFF get resolution from file
nilseling
committed
Finalized reader function
nilseling
committed
Merge pull request #79 from BodenmillerGroup/read_zarr_nils
nilseling
authored
First working version
nilseling
committed
Merge pull request #81 from BodenmillerGroup/read_zarr_nils
nilseling
authored

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