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1. PhyloSuite PhyloSuite Public

   Suite of tools that provide a unified framework of analyzing, manipulating and visualizing phylogenetic data.

   R 1

2. SandFlyComparativeGenomics SandFlyComparativeGenomics Public

   Source code for the manuscript of Charamis et al. (2024)

   R 1

3. DRAGEN-GATK4_SNP_calling_pipeline DRAGEN-GATK4_SNP_calling_pipeline Public

   Forked from slcapel/DRAGEN-GATK4_SNP_calling_pipeline

   Scalable HPC pipeline designed to call and filter variants from Illumina WGS data using DRAGEN-GATK4 Best Practices

   Shell

4. ARuS ARuS Public

   Snakemake pipeline for running automated RNAseq analysis, from fastq reads to Differential Expression (DE) analysis. The latest version includes rules for post-DE annotation of genes, including ann…

   Perl 2

5. UpSetPlot UpSetPlot Public

   Python

6. FastaLib FastaLib Public

   Custom Python library for parsing and manipulating fasta files.

   Python