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BLAST_to_FamilyCounts.ipynb
BLAST_to_FamilyCounts.ipynb
 
 
DGN_AminoAcids_OLS.ipynb
DGN_AminoAcids_OLS.ipynb
 
 
DGN_Analyses.ipynb
DGN_Analyses.ipynb
 
 
DGN_BLAST_to_FamilyCounts.ipynb
DGN_BLAST_to_FamilyCounts.ipynb
 
 
DGN_Construct_BLAST_and_SLURM.ipynb
DGN_Construct_BLAST_and_SLURM.ipynb
 
 
DGN_Families_OLS.ipynb
DGN_Families_OLS.ipynb
 
 
DGN_Get_HLA_df.ipynb
DGN_Get_HLA_df.ipynb
 
 
DGN_Get_VDJ_usage_df.ipynb
DGN_Get_VDJ_usage_df.ipynb
 
 
DGN_Get_VDJ_usage_df_collapsed.ipynb
DGN_Get_VDJ_usage_df_collapsed.ipynb
 
 
DGN_Pseudogenes.ipynb
DGN_Pseudogenes.ipynb
 
 
DGN_Sharon_Compute_Usage_Plotting.ipynb
DGN_Sharon_Compute_Usage_Plotting.ipynb
 
 
DGN_Sharon_TargSeq_Combined_Analyses.ipynb
DGN_Sharon_TargSeq_Combined_Analyses.ipynb
 
 
DGN_TranscriptCounts_FamilyCounts_AminoAcidCounts.ipynb
DGN_TranscriptCounts_FamilyCounts_AminoAcidCounts.ipynb
 
 
DGN_VDJ_OLS_LOOP.ipynb
DGN_VDJ_OLS_LOOP.ipynb
 
 
DGN_X_matrices Amino Acids.ipynb
DGN_X_matrices Amino Acids.ipynb
 
 
DGN_eQTL.ipynb
DGN_eQTL.ipynb
 
 
HLA_alleles.ipynb
HLA_alleles.ipynb
 
 
J24Seq.ipynb
J24Seq.ipynb
 
 
KIR BLAST.ipynb
KIR BLAST.ipynb
 
 
Liblau_VDJComputeUsage.ipynb
Liblau_VDJComputeUsage.ipynb
 
 
MultiPlotting-Copy1.ipynb
MultiPlotting-Copy1.ipynb
 
 
MultiPlotting.ipynb
MultiPlotting.ipynb
 
 
MultiSeqPreprocess.ipynb
MultiSeqPreprocess.ipynb
 
 
PCA.ipynb
PCA.ipynb
 
 
Plotting.ipynb
Plotting.ipynb
 
 
README.md
README.md
 
 
Related_People.ipynb
Related_People.ipynb
 
 
TargetedSequencing_Analyses.ipynb
TargetedSequencing_Analyses.ipynb
 
 
TargetedSequencing_DataMatrices-Copy1.ipynb
TargetedSequencing_DataMatrices-Copy1.ipynb
 
 
TargetedSequencing_DataMatrices.ipynb
TargetedSequencing_DataMatrices.ipynb
 
 
VDJCorrelateHLA.ipynb
VDJCorrelateHLA.ipynb
 
 
rs1154155 eQTL J24 J28.ipynb
rs1154155 eQTL J24 J28.ipynb
 
 

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TCR_usages

Collection of scripts associated with correlating HLA genotypes with TCR usages

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Collection of scripts associated with correlating HLA genotypes with TCR usages

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