Skip to content

Commit cd765fd

Browse files
hsiaoyi0504fcyu
authored andcommitted
Add SequenceWindow description
1 parent 3cbb800 commit cd765fd

File tree

1 file changed

+2
-0
lines changed

1 file changed

+2
-0
lines changed

docs/tutorial_fragpipe_outputs.md

Lines changed: 2 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -717,6 +717,8 @@ Quantification results from MS1-based isotopic labeling experiments are generate
717717

718718
**Peptide** stripped peptide sequence containing the modification sites, residues with localized modifications are shown in lower case
719719

720+
**SequenceWindow** peptide sequence around the localized modified site.
721+
720722
**MaxPepProb** highest PeptideProphet probability of the PSMs with the sequence that are used in quantification
721723

722724
**ReferenceIntensity** Real reference channel abundance is used if one has been provided, otherwise these values are virtual reference abundances from the average abundance across the channels in a plex, more usage information [here](https://fragpipe.nesvilab.org/docs/tutorial_tmt.html#quantification-settings). If the experiment contains multiple plexes, average reference intensity across all plexes is used. Values are log2 scaled, with global minimum reference intensity used to impute missing values.

0 commit comments

Comments
 (0)