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PTM identification

Status: Open.

#2560 In Nesvilab/FragPipe;

· ZHOUCAIXIAN opened on Nov 21, 2025

java.lang.NullPointerException

Status: Open.

#2558 In Nesvilab/FragPipe;

· Sud-006 opened on Nov 21, 2025

ConcurrentModificationException

Status: Open.

#2557 In Nesvilab/FragPipe;

· Sud-006 opened on Nov 21, 2025

example output data

Status: Open.

#2551 In Nesvilab/FragPipe;

· mffrank opened on Nov 20, 2025

Metaproteomics module test execution problem

Status: Open.

#2541 In Nesvilab/FragPipe;

· MiguelCos opened on Nov 13, 2025

Split database causes inconsistent mapped proteins for some peptides

Status: Open.

#2524 In Nesvilab/FragPipe;

· NikolaMonteverde opened on Oct 31, 2025

O-Pair

Status: Open.

#2522 In Nesvilab/FragPipe;

· peteythecat1 opened on Oct 29, 2025

Fragpipe V23.1 crashes with DDA+ in hybrid DIA

Status: Open.

#2520 In Nesvilab/FragPipe;

· NikolaMonteverde opened on Oct 29, 2025

IonQuant can now quantify DIA data?

Status: Open.

#2512 In Nesvilab/FragPipe;

· LKittinun opened on Oct 25, 2025

Was the "contam_" flagging of contaminants removed?

Status: Open.

#2510 In Nesvilab/FragPipe;

· ruwoltMax opened on Oct 23, 2025

DIA-Quant propagation error after split database

Status: Open.

#2497 In Nesvilab/FragPipe;

· SR-46 opened on Oct 16, 2025

Log file not always created when running FragPipe in headless mode

Status: Open.

#2473 In Nesvilab/FragPipe;

· hollenstein opened on Oct 7, 2025