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Description
- Describe the feature:
Hi FragPipe Team,
Thank you for the great repo. I am wondering if it would be possible for you to host miniaturized versions of example output files:
psm.tsv (from Philosopher, updated by PTM-Shepherd and IonQuant)
ion.tsv (from Philosopher, overwritten by IonQuant)
peptide.tsv (from Philosopher, overwritten by IonQuant)
protein.tsv (from Philosopher, overwritten by IonQuant)
combined_ion.tsv (from Philosopher, overwritten by IonQuant)
combined_modified_peptide.tsv (from IonQuant)
combined_peptide.tsv (from Philosopher, overwritten by IonQuant)
combined_protein.tsv (from Philosopher, overwritten by IonQuant)
Having versions that correspond to the current version of fragpipe and are at a stable url would be very helpful for building downstream tools that depend on those formats. I'm trying to build a tool that reads proteomics output into AnnData and would like to make sure that it's as stable as possible.
Thank you in advance!