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A bug of depthcharge parsing precursor charge that is None

bugSomething isn't workingSomething isn't working

Status: Open.

#564 In Noble-Lab/casanovo;

· mkkoshkina opened on Dec 15, 2025

How to train a new model?

Status: Open.

#562 In Noble-Lab/casanovo;

· biocc opened on Dec 1, 2025

Update docs with proforma

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#551 In Noble-Lab/casanovo;

· wsnoble opened on Nov 6, 2025

Handle config options with Hydra

enhancementNew feature or requestNew feature or request

Status: Open.

#545 In Noble-Lab/casanovo;

· wsnoble opened on Oct 29, 2025

Multiple PTMs on a singl residue

Status: Open.

Bug

#537 In Noble-Lab/casanovo;

· bittremieux opened on Oct 14, 2025

min_peptide_length

bugSomething isn't workingSomething isn't working

Status: Open.

#518 In Noble-Lab/casanovo;

· wsnoble opened on Sep 19, 2025

Training with devices > 1 and accumulate_grad_batches > 1 fails

bugSomething isn't workingSomething isn't working

Status: Open.

#512 In Noble-Lab/casanovo;

· PigeonMark opened on Aug 29, 2025

Predicting with half precision

bugSomething isn't workingSomething isn't working

Status: Open.

#508 In Noble-Lab/casanovo;

· PigeonMark opened on Aug 14, 2025

improve evaluate outputs

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#453 In Noble-Lab/casanovo;

· wsnoble opened on Apr 15, 2025

Propagate RT info to output file

enhancementNew feature or requestNew feature or request

Status: Open.

#427 In Noble-Lab/casanovo;

· wsnoble opened on Jan 16, 2025

·  

Depthcharge v0.4

Predicting isoleucine

enhancementNew feature or requestNew feature or request

Status: Open.

#416 In Noble-Lab/casanovo;

· PigeonMark opened on Dec 10, 2024

·  

Depthcharge v0.4

Casanovo-DB potential performance improvements

enhancementNew feature or requestNew feature or request

Status: Open.

#402 In Noble-Lab/casanovo;

· bittremieux opened on Nov 18, 2024

·  

Casanovo v5.0.0