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Copilot AI commented Oct 30, 2025

Fix broken link in glossary to TOPP_MascotAdapter.html

Plan:

  • Explore repository structure and locate the broken link
  • Build documentation to verify current state
  • Remove the broken link reference while keeping the Mascot glossary entry
  • Rebuild documentation to verify the fix
  • Verify the built HTML no longer contains the broken link
  • Fix missing Mascot term name in glossary

Issue: The link to https://openms.de/current_doxygen/html/TOPP_MascotAdapter.html returns a 404 error.

Solution: Removed the broken link reference in the Mascot glossary entry in docs/manual/glossary.md while keeping the definition intact. Fixed an issue where the term name "Mascot" was accidentally removed.

Changes:

  • Modified docs/manual/glossary.md to remove the broken link while preserving the complete glossary entry with the term name "Mascot"
Original prompt
  1. 404 Errors
    File: build/html/manual/glossary.html
    Broken Link: TOPP_MascotAdapter.html
    Solution:
    Update or remove the reference to TOPP_MascotAdapter.html in your documentation source (likely in the manual/glossary.html source or its markdown/rst input).
    If the correct URL exists, replace the broken link.

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Copilot AI self-assigned this Oct 30, 2025
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Copilot AI changed the title [WIP] Fix broken link to TOPP_MascotAdapter in glossary Remove broken TOPP_MascotAdapter.html link from glossary Oct 30, 2025
Copilot AI requested a review from timosachsenberg October 30, 2025 10:15
Copilot finished work on behalf of timosachsenberg October 30, 2025 10:15
@timosachsenberg timosachsenberg marked this pull request as ready for review October 30, 2025 10:48
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@copilot /home/runner/work/OpenMS-docs/OpenMS-docs/docs/getting-started/visualize-with-openms/data-analysis-in-toppview.md:31: WARNING: term not in glossary: 'Mascot'

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Copilot AI commented Oct 30, 2025

@copilot /home/runner/work/OpenMS-docs/OpenMS-docs/docs/getting-started/visualize-with-openms/data-analysis-in-toppview.md:31: WARNING: term not in glossary: 'Mascot'

Fixed in commit 14e06a6. The Mascot term name was accidentally removed in the previous commit. It has now been restored to the glossary, so the {term}Mascot reference in data-analysis-in-toppview.md will work correctly.

Copilot AI requested a review from timosachsenberg October 30, 2025 17:45
Copilot finished work on behalf of timosachsenberg October 30, 2025 17:45
@timosachsenberg timosachsenberg merged commit 7b51c25 into develop Oct 30, 2025
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2 participants