Search results

Pulling code out of rules

enhancementNew feature or requestNew feature or request

Status: Open.

#145 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 20, 2025

Install/environment problems

Status: Open.

#144 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 20, 2025

· 

SnekmerRelease2025

Model/Search downgrading

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#143 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 20, 2025

· 

SnekmerRelease2025

Learn to apply transition improved - model format

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#142 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 20, 2025

· 

SnekmerRelease2025

Annotations file for learn

Status: Open.

#141 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 20, 2025

· 

SnekmerRelease2025

Generally better error messages and error checking

enhancementNew feature or requestNew feature or request

Status: Open.

#140 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 19, 2025

· 

SnekmerRelease2025

FASTA protein id extraction

Status: Open.

#139 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 19, 2025

· 

SnekmerRelease2025

Jupyter notebooks for tutorial

Status: Open.

#136 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 18, 2025

· 

SnekmerRelease2025

motif mode should not be part of learn_decoy_implementation branch

questionFurther information is requestedFurther information is requested

Status: Open.

#135 In PNNL-CompBio/Snekmer;

· biodataganache opened on Aug 18, 2025

<code>scikit-learn</code> version prevents tutorial from running correctly

Status: Open.

#128 In PNNL-CompBio/Snekmer;

· Ben-Drucker opened on Mar 26, 2025

Issues installing on Windows 11

CheckIssuePlease check to see if this issue can be closedPlease check to see if this issue can be closed

Status: Open.

#125 In PNNL-CompBio/Snekmer;

· wichne opened on Jun 6, 2024

Apply fails with single input file

Status: Open.

#123 In PNNL-CompBio/Snekmer;

· tnitka opened on Mar 20, 2024