Resolving Error in 'run_infer.sh' Script Due to Duplicate 'bfd_database_path' Argument#359
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davidwongmedinfo wants to merge 2 commits intoPaddlePaddle:devfrom
Open
Resolving Error in 'run_infer.sh' Script Due to Duplicate 'bfd_database_path' Argument#359davidwongmedinfo wants to merge 2 commits intoPaddlePaddle:devfrom
davidwongmedinfo wants to merge 2 commits intoPaddlePaddle:devfrom
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There are two identical 'bfd_database_path' arguments in the 'run_infer.sh' script, which would lead to error when set 'full_dbs' for 'preset' argument.
There are two identical bfd_database_path arguments in the run_infer.sh script, which would lead to error when set 'full_dbs' for 'preset' argument.
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Hi there,
I encountered a problem when running the 'run_infer.sh' script with '--preset' set to 'full_dbs'. The error message was: ValueError: Could not find HHBlits database ./data/small_bfd/bfd-first_non_consensus_sequences.fasta. I noticed that there were two identical arguments '--bfd_database_path' specified, and this issue could be fixed by deleting the duplicate line: --bfd_database_path "$DATA_DIR/small_bfd/bfd-first_non_consensus_sequences.fasta".