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RMeneses99/README.md

Hi there, I'm Rui Meneses 👋

I'm a Bioinformatician at the Raes Lab, VIB (Flanders Institute for Biotechnology) in Leuven, Belgium 📍. My work focuses on the genomics, metagenomics, and ecology of the human gut microbiome. 🦠

I specialize in developing robust, high-throughput processing pipelines and translating complex multi-omic data into actionable biological insights. I'm a strong advocate for reproducible research and open-source science.

💻 My Tech Stack

  • Languages:
    Python
    Bash
    R

  • Workflow Management:
    Nextflow

  • Containerization & Environments:
    Singularity
    Conda

  • Version Control:
    GitLab
    GitHub
    Git

  • HPC & OS:
    Linux
    SLURM

🌱 My Focus & Interests

  • 🔬 Currently: I am developing and optimizing a scalable pipeline for shotgun metagenomics analysis to handle large-scale cohort data.
  • 💡 Interests: I am passionate about long-read sequencing applications in metagenomics, multi-omics data integration, and applying machine learning for biomarker discovery.

Popular repositories Loading

  1. RMeneses99 RMeneses99 Public

  2. dotfiles-desktop dotfiles-desktop Public

    My personal configs, for desktop environments.

    Tree-sitter Query

  3. dotfiles-briefcase dotfiles-briefcase Public

    Personal configuration files for my development environment across machines.

  4. euporie-apptainer euporie-apptainer Public

    Terminal notebook frontend with containerized kernels — one euporie, many isolated environments

    Shell

  5. gemelli gemelli Public

    Forked from biocore/gemelli

    Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on spar…

    Python